View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5893-Insertion-2 (Length: 605)
Name: NF5893-Insertion-2
Description: NF5893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5893-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 9 - 605
Target Start/End: Original strand, 7046581 - 7047177
Alignment:
| Q |
9 |
gaaataacataatgcaatcttattgtatagttctattacctaaaattgcaaggaatctccattcaacaaaaagtcctagcagataagccagcataattcc |
108 |
Q |
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| T |
7046581 |
gaaataacataatgcaatcttattgtatagttctattacctaaaattgcaaggaatctccattcaacaaaaagtcctagcagataagccagcataattcc |
7046680 |
T |
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| Q |
109 |
aagtgtgacagaaagctatgcagaaaacaaaaatttaaaataaagctcactaatctaggaagtgataatttattcaaatgtagcaccaaaatagaaattt |
208 |
Q |
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| T |
7046681 |
aagggtgacagaaagctatgcagaaaacaaaaattttaaataaagctcactaatctaggaagtgataatttattcaaatgtagcaccaaaatagaaattt |
7046780 |
T |
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| Q |
209 |
aactctaattgatggtatttaccaacctggttaactgaaaccagacttcccctcaagttttgaggtgatatctcagctatatacactggcacctgtatga |
308 |
Q |
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| T |
7046781 |
aactctaattgatggtatttaccaacctggttaaccgaaaccagacttcccctcaagttttgaggtgatatctcagctatatacactggcacctgtatga |
7046880 |
T |
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| Q |
309 |
attaattcgaaaactcaattattgtcttctcatataaattgatcacacactagcaaaagtgaaaacgattggaaattaccgtgtaagatattattccgac |
408 |
Q |
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| T |
7046881 |
attaattcgaaaactcaattattgtctactcatataaattgatcacacactagcaaaagtgaaaacgattggaaattaccgtgtaagatattattccgac |
7046980 |
T |
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| Q |
409 |
gccaaatccttccaacaaccttcccatatagagaaaagaagaatcctgaaagatgcaaatattgttatgttattaattgaagtaacactaatagtcgttt |
508 |
Q |
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| T |
7046981 |
gccaaatccttccaacaaccttcccatatagagaaaagaagaatcctgaaagatgcaaatattgttatgttattaattgaagtaacactaatagtcgttt |
7047080 |
T |
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| Q |
509 |
tatcaccgtagggatttgaactcggtcccttgaggctataaggtcaaacacttaccattgagttgacatctctgtgtacaaatgcaaaacatgttat |
605 |
Q |
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| T |
7047081 |
tatcaccatagggatttgaactcggtcccttgaggttataaggtcaaacacttactactgagttgacatctccgtgtacaaatgcaaaacatgttat |
7047177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 32935680 - 32935629
Alignment:
| Q |
392 |
taagatattattccgacgccaaatccttccaacaaccttcccatatagagaa |
443 |
Q |
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| T |
32935680 |
taagatattatccccactccaaaaccttccaacaaccttcccatatatagaa |
32935629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 576
Target Start/End: Complemental strand, 41337709 - 41337654
Alignment:
| Q |
520 |
ggatttgaactcggtcccttgaggctataaggtcaaacacttaccattgagttgaca |
576 |
Q |
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| T |
41337709 |
ggatttgaactccg-cccttgaggttataaggtcaaactcttaccactgagctgaca |
41337654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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