View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5893-Insertion-6 (Length: 279)
Name: NF5893-Insertion-6
Description: NF5893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5893-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 5377371 - 5377642
Alignment:
| Q |
9 |
atacttacataacatcgaagacgctaccatcaggtgtgcaaactggaaactcaaacggagtaaaagtaagtctgaatattcnnnnnnnnnnnnnnnnnnn |
108 |
Q |
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| T |
5377371 |
atacttacataacatcgaagacgctaccatcaggtgtgcaaactggaaactcaaacggagtaaaagtaagtctgaatattcaaaaaaaaaatatatatat |
5377470 |
T |
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| Q |
109 |
-ttattagttgaatgaaaaattgattgaatgaaaggatgaaggtgtaaagagaatgaatagaaaacgcacgcgcagcaataaaaaggaagacgtttgaag |
207 |
Q |
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| T |
5377471 |
attattagttgaatgaaaaattgattgaatgaaaggatgaaggtgtaaagagaatgaatagaaaacgcacgcgcagcaataaaaaggaagacgtttgaaa |
5377570 |
T |
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| Q |
208 |
acggtgcgattttctttggatttgtaaccgccccattccgttgcccactcagttttggttaaggacattcgg |
279 |
Q |
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| T |
5377571 |
acggtgcgattttctttggatttgtaaccaccccattccgttgcccactcagttttggttaagaacattcgg |
5377642 |
T |
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