View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5893-Insertion-8 (Length: 126)
Name: NF5893-Insertion-8
Description: NF5893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5893-Insertion-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 3e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 47193587 - 47193469
Alignment:
| Q |
8 |
aaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttcta |
107 |
Q |
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| T |
47193587 |
aaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttcta |
47193488 |
T |
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| Q |
108 |
tatactcatagaccaaaag |
126 |
Q |
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| T |
47193487 |
tatactcatagaccaaaag |
47193469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 9792687 - 9792569
Alignment:
| Q |
8 |
aaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttcta |
107 |
Q |
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|||||||| |||||||||| |||| ||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| | |
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| T |
9792687 |
aaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatgaaccatgttcca |
9792588 |
T |
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| Q |
108 |
tatactcatagaccaaaag |
126 |
Q |
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| T |
9792587 |
tatactcataaaccaaaag |
9792569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 4e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 6609336 - 6609448
Alignment:
| Q |
10 |
ataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctata |
109 |
Q |
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|||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
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| T |
6609336 |
ataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccata |
6609435 |
T |
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| Q |
110 |
tactcatagacca |
122 |
Q |
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|||||||| |||| |
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| T |
6609436 |
tactcataaacca |
6609448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 6624785 - 6624673
Alignment:
| Q |
10 |
ataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctata |
109 |
Q |
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|||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |
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| T |
6624785 |
ataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccgta |
6624686 |
T |
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| Q |
110 |
tactcatagacca |
122 |
Q |
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|||||||| |||| |
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| T |
6624685 |
tactcataaacca |
6624673 |
T |
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