View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5893_low_2 (Length: 361)
Name: NF5893_low_2
Description: NF5893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5893_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 26817860 - 26818001
Alignment:
| Q |
1 |
aaaggcatgtataagatgagatcactaccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatggtaatcgagtgaca |
100 |
Q |
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| T |
26817860 |
aaaggcatgtataagatgagattactaccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatgataatcgagtgaca |
26817959 |
T |
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| Q |
101 |
tttgttgcatcctcgtcatcaaacattcgttcgcattcactg |
142 |
Q |
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| T |
26817960 |
tttgttgcatcctcgtcatcaaacattcgttcgcattcactg |
26818001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 26791198 - 26791313
Alignment:
| Q |
26 |
taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatggtaatcgagtgacatttgttgcatcctcgtcatcaaaca |
125 |
Q |
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|||||||||||||||||||||| |||| |||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
26791198 |
taccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaaca |
26791297 |
T |
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| Q |
126 |
ttcgttcgcattcact |
141 |
Q |
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||| || ||||||||| |
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| T |
26791298 |
ttcatttgcattcact |
26791313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 26784995 - 26785106
Alignment:
| Q |
26 |
taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatggtaatcgagtgacatttgttgcatcctcgtcatcaaaca |
125 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||||||| ||| ||||||| ||||| |||||||| | ||||||||||||||||||||| |
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| T |
26784995 |
taccattgaagccaaagaaggcataagtagaagaccccacttcttgttcaaccgtaaaatgataatcaagtgacatcttttgcatcctcgtcatcaaaca |
26785094 |
T |
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| Q |
126 |
ttcgttcgcatt |
137 |
Q |
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||| |||||||| |
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| T |
26785095 |
ttcattcgcatt |
26785106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 26831635 - 26831750
Alignment:
| Q |
26 |
taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatggtaatcgagtgacatttgttgcatcctcgtcatcaaaca |
125 |
Q |
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|||| |||||||||||||||||||||| ||||||||| ||||||||||| || ||||||| |||| ||||||||| | ||||||||| ||||| ||||| |
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| T |
26831635 |
taccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaaca |
26831734 |
T |
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| Q |
126 |
ttcgttcgcattcact |
141 |
Q |
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||| | |||||||||| |
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| T |
26831735 |
ttcatccgcattcact |
26831750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 26818076 - 26818108
Alignment:
| Q |
281 |
tttcataaaattatttctatttcggtcgcttat |
313 |
Q |
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| T |
26818076 |
tttcataaaattatttctatttcggtcgcttat |
26818108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 41919587 - 41919471
Alignment:
| Q |
26 |
taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatggtaatcgagtgacatttgttgcatcctcgtcatcaaaca |
125 |
Q |
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|||| ||||||||||||||||| |||| |||||| |||||||||||||| || ||||||||||||| |||||||| | |||||| || ||||||| ||| |
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| T |
41919587 |
taccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcatcataca |
41919488 |
T |
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| Q |
126 |
ttcgttcgcattcactg |
142 |
Q |
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||| | || |||||||| |
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| T |
41919487 |
ttcatccgaattcactg |
41919471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 31850877 - 31850844
Alignment:
| Q |
240 |
gtgctccaaaggtaatggttaagcatcaaaaaca |
273 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
31850877 |
gtgctccaaaggtaatggttaagcatctaaaaca |
31850844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 4128834 - 4128766
Alignment:
| Q |
227 |
agaatgctaaccggtgctccaaaggtaatggttaagcatcaaaaacagttacgttttcataaaattatt |
295 |
Q |
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||||||||||||||||| |||| || |||||||||||||| |||||| || |||||||| ||| |||| |
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| T |
4128834 |
agaatgctaaccggtgccccaagggcaatggttaagcatccaaaacaagtaagttttcatgaaaatatt |
4128766 |
T |
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