View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5894_low_1 (Length: 272)
Name: NF5894_low_1
Description: NF5894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5894_low_1 |
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| [»] scaffold0136 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 45140436 - 45140269
Alignment:
| Q |
16 |
catccaacgatggcttcacgcttgtgaattctttttattttgattttcttatgttctaatccttgtttgttcaacggacttctcttcttgcatcattgat |
115 |
Q |
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| T |
45140436 |
catccaacgatggcttcacgcttgtgaattctttttattttgattttcttatgttctaatccttgtttgttcaacggacttctcttcttgcatcattgat |
45140337 |
T |
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| Q |
116 |
ctctgaaatatgcttattagttaatattttcttgctactagctggtactttaattacaaaagtattgt |
183 |
Q |
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| T |
45140336 |
ctctgaaatatgcttattagttaatattttcttgctactagctggtactttaattacaaaagtattgt |
45140269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 45140249 - 45140161
Alignment:
| Q |
167 |
aattacaaaagtattgtatataaaagagtgatatatagctgaaagtggagatggaatcaaattataaaagaaaattaaaggacatgcgt |
255 |
Q |
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| T |
45140249 |
aattacaaaagtattgtatataaaagagtgatatatagctgaaagtggagatggaatcaaattataaaagaaaattaaaggacatgcgt |
45140161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 39166898 - 39167056
Alignment:
| Q |
94 |
cttctcttcttgcatcattgatctctgaaatatgcttattagttaatattttcttgctactagctggtactttaattacaaaagtattgtatataaaaga |
193 |
Q |
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| T |
39166898 |
cttctcttcttgcatcattgatctctgaaatatgcttattagttaatattttcttgctactagctggtactttaattacaaaagtactgtatataaaaga |
39166997 |
T |
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| Q |
194 |
gtgatatatagctgaaagtggagatggaatcaaattataaaagaaaattaaaggacatg |
252 |
Q |
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| T |
39166998 |
gtgatatatagctgaaagtggagatggaatcaaattataaaagaaaattaaaggacatg |
39167056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 39166794 - 39166873
Alignment:
| Q |
16 |
catccaacgatggcttcacgcttgtgaattctttttattttgattttcttatgttctaatccttgtttgttcaacggact |
95 |
Q |
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| T |
39166794 |
catccaacgatggcttcatgcttgtgaattctttttattctaattttcttatgttctaatccttgtttgttcaacggact |
39166873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 94 - 252
Target Start/End: Original strand, 20957 - 21115
Alignment:
| Q |
94 |
cttctcttcttgcatcattgatctctgaaatatgcttattagttaatattttcttgctactagctggtactttaattacaaaagtattgtatataaaaga |
193 |
Q |
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| T |
20957 |
cttctcttcttgcatcattgatctctgaaatatgcttattagttaatattttcttgctactagctggtactttaattacaaaagtactgtatataaaaga |
21056 |
T |
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| Q |
194 |
gtgatatatagctgaaagtggagatggaatcaaattataaaagaaaattaaaggacatg |
252 |
Q |
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| T |
21057 |
gtggtatatagctgaaagtggagatggaatcaaattataaaagaaaattaaaggacatg |
21115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 20853 - 20932
Alignment:
| Q |
16 |
catccaacgatggcttcacgcttgtgaattctttttattttgattttcttatgttctaatccttgtttgttcaacggact |
95 |
Q |
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| T |
20853 |
catccaacgatggcttcacgcttgtgaattctttttattctgatcttcttatgttctaatcgttttttgttcaacggact |
20932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 42440718 - 42440611
Alignment:
| Q |
130 |
tattagttaatattttcttgctacta--gctggtactttaatta--caaaagtattgtatataaa--agagtgatatatagctgaaagtggagatggaat |
223 |
Q |
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||||| ||||| |||||||||||||| ||| |||||||||||| |||||||| || |||||| |||||||||||||| |||||| |||| ||||| |
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| T |
42440718 |
tattacttaatgttttcttgctactatagctagtactttaattaaacaaaagtactgcctataaataagagtgatatatagttgaaagctgagagggaat |
42440619 |
T |
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| Q |
224 |
caaattat |
231 |
Q |
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| T |
42440618 |
caaattat |
42440611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 42440778 - 42440746
Alignment:
| Q |
94 |
cttctcttcttgcatcattgatctctgaaatat |
126 |
Q |
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| T |
42440778 |
cttctcttcttgcatcattgatctctaaaatat |
42440746 |
T |
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