View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5895-Insertion-1 (Length: 886)
Name: NF5895-Insertion-1
Description: NF5895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5895-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 658; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 217 - 886
Target Start/End: Complemental strand, 45068181 - 45067512
Alignment:
| Q |
217 |
aactttttatccttcattataaagtttttaaaacaatttttgtattagactcacattcatagtgctgattaattaagaagataagcaaatatggagaaga |
316 |
Q |
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| T |
45068181 |
aactttttatccttcattataaagtttttaaaacaatttttgtattagactcacattcatagtgctgattaattaagaagataagcaaatatggagaaga |
45068082 |
T |
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| Q |
317 |
acgaggaacaaaattgaagtcataaaccctaagtcagttgtttgtgttttctttttggatcatgaatgagaagttataaatgtttattgcttgtgttaca |
416 |
Q |
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| T |
45068081 |
atgaggaacaaaattgaagtcataaaccctaagtcagttgtttgtgttttctttttggatcatgaatgagaagttataaatgtttattgcttgtgttaca |
45067982 |
T |
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| Q |
417 |
ggcattcttccagcgttggtggagagaacaaagtggggaagttcagaaaatagtcaagcagctggtcaactctggtcaattggagttcatgtattcatcc |
516 |
Q |
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| T |
45067981 |
ggcattcttccagcgttggtggagagaacaaagtggggaagttcagaaaatagtcaagcagctggtcaactctggtcaattggagttcatgtattcatct |
45067882 |
T |
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| Q |
517 |
atctgactttccattattgcatgtcaaggaaaattgatctttgatcattatccatgtgcttgattgtagtataataggattcagttacaatgacatcaaa |
616 |
Q |
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| T |
45067881 |
atctgactttccattattgcatgtcaaagaaaattgatctttgatcattatccatgtgcttgattgtagtataataggattcagttacaatgacatcaaa |
45067782 |
T |
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| Q |
617 |
tgattcctaagatttctgattgcagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggaca |
716 |
Q |
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| T |
45067781 |
tgattcctaagatttctgattgcagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggaca |
45067682 |
T |
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| Q |
717 |
tcgattcatcaaagaagtattcgggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagag |
816 |
Q |
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| T |
45067681 |
tcgattcatcaaagaagtattcgggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagag |
45067582 |
T |
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| Q |
817 |
gtaccattttgttaaattgtaagaaacatataaatttgatgatgagaaaaagaatgattttgaagttgat |
886 |
Q |
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| T |
45067581 |
gtaccattttgttaaattgtaagaaacatataaatttgatgatgagaaaaagaatgattttgaagttgat |
45067512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 45068358 - 45068194
Alignment:
| Q |
11 |
tacgacactaacacatcaagttatattcaaatatttcgtgttaacatgtcagtgttgtgtatctgaatgtccgtgtctatttcagtgctttattgctatg |
110 |
Q |
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| T |
45068358 |
tacgacactaacacatcaagttatattcaaatatttcgtgttaacatgtcagtgttgtgtgtctgaatgtccgtgtctatttcagtgctttattgctatg |
45068259 |
T |
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| Q |
111 |
catgcaatctcaatatgcatatgcagttcataacgatatattaataatagtaatacaagaaaaat |
175 |
Q |
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| T |
45068258 |
catgcaatctcaatatgcatatgcagttcataacgatatattaataatagtaatacaagaaaaat |
45068194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 639 - 812
Target Start/End: Complemental strand, 32385657 - 32385484
Alignment:
| Q |
639 |
cagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggacatcgattcatcaaagaagtattc |
738 |
Q |
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| T |
32385657 |
cagaaacggtggcatgtgtatgcatgatgaggcagtagttcattacatagacatgattgatcagactacacttggacaccgatttctgaaagaggagttc |
32385558 |
T |
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| Q |
739 |
gggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagc |
812 |
Q |
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| T |
32385557 |
gatttgactccaagaattggttggcaaattgacccgtttggacattctgctgtgcaggcttatttattgggagc |
32385484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 640 - 829
Target Start/End: Complemental strand, 32400016 - 32399827
Alignment:
| Q |
640 |
agaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggacatcgattcatcaaagaagtattcg |
739 |
Q |
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| T |
32400016 |
agaaatggtggtatgtgcatgcatgacgaggccaccccgcattacattgacctgattgatcagaccactcttgggcatcaatttatcaaagatgagtttg |
32399917 |
T |
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| Q |
740 |
ggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagaggtaccattttgtt |
829 |
Q |
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| T |
32399916 |
gtaagaatccaagagttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctgaggtacgatattgtt |
32399827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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