View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5895-Insertion-2 (Length: 493)
Name: NF5895-Insertion-2
Description: NF5895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5895-Insertion-2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 9 - 493
Target Start/End: Original strand, 9536403 - 9536887
Alignment:
| Q |
9 |
gatttgaaattttgaagcaacgaacttgacatgctttgtttttggggatgttgtccgaaactcttaaagttcttatctaattaaaaatgttgagtctctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9536403 |
gatttgaaattttgaagcaacgaacttgacatgctttgtttttggggatgttgtccgaaactcttaaagttcttatctaattaaaaatgttgagtctctt |
9536502 |
T |
|
| Q |
109 |
aaagtgatttattttagttcaatttctgaaatttaaagttacagccaagtatgagatagaatttcaaattaatcaaaacaccatgtgtcaaaccaacatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9536503 |
aaagtgatttattttagttcaatttctgaaatttaaagttacagccaagtatgagatagaatttcaaattaatcaaaacaccatgtgtcaaaccaacatc |
9536602 |
T |
|
| Q |
209 |
acaccctttaccttttcctttctgatgcaaagtagaatatttctagcaacataaatattttccttagaagaactatttccatacctaaccatttgaaaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9536603 |
acaccctttaccttttcctttctgatgcaaagtagaatatttctagcaacataaatattttccttagaagaactatttccatacctaaccatttgaaaac |
9536702 |
T |
|
| Q |
309 |
ttcatagcatatggcgcttgtgaaaccacacatagtgaataagtgattatccgattaaccgcatcttcaagatatttttccttgttggaagtcgatttaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9536703 |
ttcatagcatatggcgcttgtgaaaccacacatagtgaataagtgattatccgattaaccgcatcttcaagatatttttccttgttggaagtcgatttaa |
9536802 |
T |
|
| Q |
409 |
aatcaactttcaagagaagaataaaacctttgaaggagcacgtctccccccaaaccttatcaagtaactcaccctatgacacatc |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9536803 |
aatcaactttcaagagaagaataaaacctttgaaggagcacgtctccccccaaaccttatcaagtaactcaccctatgacacatc |
9536887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University