View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5895-Insertion-3 (Length: 362)
Name: NF5895-Insertion-3
Description: NF5895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5895-Insertion-3 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0288 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 2137 - 1788
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2137 |
tattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatca |
2038 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgaggaacaagtgataa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2037 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgagaaacaagtgataa |
1938 |
T |
|
| Q |
209 |
gcatgtgctttaatagaagnnnnnnnnggacaatgctataaaattggaaaatac-aaagaaatccaagcagataaaatctgggaggttgagactctatta |
307 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
1937 |
gcatgtgctttaatagaagaaaaaaaaggacaacgctataaaattggaaaatacaaaagaaatccaaacaaataaaatctgggaggttgagattctatta |
1838 |
T |
|
| Q |
308 |
aaaggaaataagtaccatgcaactc---aattattaattttgcaatgaaa |
354 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1837 |
aaaggaaataagtaccatgcaactctattattattaattttgcaatgaaa |
1788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 26)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 4618743 - 4619092
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618743 |
tattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatca |
4618842 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgaggaacaagtgataa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4618843 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgagaaacaagtgataa |
4618942 |
T |
|
| Q |
209 |
gcatgtgctttaatagaagnnnnnnnnggacaatgctataaaattggaaaatac-aaagaaatccaagcagataaaatctgggaggttgagactctatta |
307 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
4618943 |
gcatgtgctttaatagaagaaaaaaaaggacaacgctataaaattggaaaatacaaaagaaatccaaacaaataaaatctgggaggttgagattctatta |
4619042 |
T |
|
| Q |
308 |
aaaggaaataagtaccatgcaactc---aattattaattttgcaatgaaa |
354 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4619043 |
aaaggaaataagtaccatgcaactctattattattaattttgcaatgaaa |
4619092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 4603552 - 4603888
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||| || ||||||||| | |||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4603552 |
tattcggtgttgacaaaggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaacattggattgatatggccttgaagtggatatggaatca |
4603651 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgaggaacaagtg---a |
205 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||| | ||||| | | ||| ||| |||||| ||||| ||||||||||| ||||||||| | |
|
|
| T |
4603652 |
acacagcatgttgttttctgtttgcaaagtttcccattttagttaattttctatttggatattatgtgtgcaaaatatgaggttgaagaacaagtgataa |
4603751 |
T |
|
| Q |
206 |
taagcatgtgctttaatagaagnnnnnnnnggacaatgctataaaattggaaaatacaaagaaatccaagcagataaaatctgggaggttgagactctat |
305 |
Q |
| |
|
||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4603752 |
taagcatgtgcattaatag-agagaataaatgacaatgctacaaaattggaaaatacaaagaaatccaaagagataaaatctgggaggttgagattctaa |
4603850 |
T |
|
| Q |
306 |
taaaaggaaataagtaccatgcaactcaattattaattt |
344 |
Q |
| |
|
||| ||||||||| ||| |||||||||| ||||||| |
|
|
| T |
4603851 |
caaagtgaaataagt-tcatccaactcaatttttaattt |
4603888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 4594452 - 4594744
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||| |||| |||||||| |
|
|
| T |
4594452 |
tattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatca |
4594551 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatctt-----ttgatgttatgtttgcaagttatgaggttgaggaacaagt |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||| | || || |||||||| |||||| || ||||||||| ||||||| |
|
|
| T |
4594552 |
acacagcatgtggttttctgtttgcaaagtttcccatctttgataattctctattgaatgttattgttatgtgtgcaagatacgaggttgagaaacaagt |
4594651 |
T |
|
| Q |
204 |
gataagcatgtgctttaataga-agnnnnnnnnggacaatgctataaaattggaaaatacaaagaaatccaagcagataaaatctgggaggtt |
295 |
Q |
| |
|
||||| |||| ||||||||||| | ||| | ||||||||||||| |||||| |||||||||||| ||| |||||||||| ||||| |
|
|
| T |
4594652 |
gataaacatgggctttaatagagaaaaaaaaaaggaaattgctataaaattgaaaaatataaagaaatccaaacagttaaaatctggaaggtt |
4594744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 4565471 - 4565756
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||| ||||||| |||| |||||||| |
|
|
| T |
4565471 |
tattcagtgttgacaaaggttatatgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatca |
4565570 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgaggaacaagtgataa |
208 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| ||||| | || | | ||| ||||||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
4565571 |
acacagcatgtggttttctgtttgcaaaacttcccatctttgaaatttttctgtttgtatgttatttgtgcaagatatgaggttgaaaaacaagtgatag |
4565670 |
T |
|
| Q |
209 |
gcatgtgctttaatagaagnnnnnnnnggacaatgctataaaattggaaaatacaaagaaatccaagcagataaaatctgggaggtt |
295 |
Q |
| |
|
||||||||||| |||| || ||||||||||| ||||||| |||||| |||||||||||| |||||||| ||||||||||| |
|
|
| T |
4565671 |
gcatgtgcttttatag-agagaaaaaaggacaatgctacaaaattgaaaaatataaagaaatccaaacagataaattctgggaggtt |
4565756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 4507353 - 4507480
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4507353 |
tattcggtgttaacaaaggttatgtgaaagcctcgaaggtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatca |
4507452 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaa |
136 |
Q |
| |
|
|||| ||||||||||||| |||||||| |
|
|
| T |
4507453 |
acacagcatgtggttttctctttgcaaa |
4507480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 4513665 - 4513518
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
4513665 |
tattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagtagttttgctaatctgaacattggattgatatggccttgaagtggatatggaatca |
4513566 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataatt |
156 |
Q |
| |
|
|||| |||||||||||||| ||||| | || | ||||| |||||||| |
|
|
| T |
4513565 |
acacagcatgtggttttctgcttgcagaattactcatttctgataatt |
4513518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 3173445 - 3173589
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||| | ||||||| |||||||||||||||||||||||||||| | | |
|
|
| T |
3173445 |
tattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagtta |
3173544 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgata |
153 |
Q |
| |
|
||| ||||||||||||| ||||||||||| | ||| ||||||| |
|
|
| T |
3173545 |
acactgcatgtggttttctctttgcaaagttactcatctttgata |
3173589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 4558567 - 4558683
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4558567 |
tattcagtgtttacataggttatgtgaaatcctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaatta |
4558666 |
T |
|
| Q |
109 |
tcacaacatgtggtttt |
125 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
4558667 |
acacagcatgtggtttt |
4558683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 4258863 - 4258750
Alignment:
| Q |
8 |
atattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatc |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4258863 |
atattcagtgttgacaaaggttatgtgaaaacctttaaagtgaagaagcttagctagtttgaacaatggattgatatggccttgagctggatatggaatc |
4258764 |
T |
|
| Q |
108 |
atcacaacatgtgg |
121 |
Q |
| |
|
| |||| ||||||| |
|
|
| T |
4258763 |
aacacagcatgtgg |
4258750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 4471356 - 4471483
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
4471356 |
tattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatca |
4471455 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaa |
136 |
Q |
| |
|
||| ||||||| ||| | |||||||| |
|
|
| T |
4471456 |
atacagcatgtggctttgtctttgcaaa |
4471483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 4265743 - 4265631
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
4265743 |
tattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttcctagattgaacaatgcattgatatggccttgaaatggagctggaatca |
4265644 |
T |
|
| Q |
109 |
tcacaacatgtgg |
121 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
4265643 |
acacagcatgtgg |
4265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4623749 - 4623861
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| |||| | |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4623749 |
tattcggtgtgaccaaaggttatgtgaaagcctttaaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatca |
4623848 |
T |
|
| Q |
109 |
tcacaacatgtgg |
121 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
4623849 |
acacagcatgtgg |
4623861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4627592 - 4627704
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4627592 |
tattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagtaattttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatca |
4627691 |
T |
|
| Q |
109 |
tcacaacatgtgg |
121 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
4627692 |
acacagcatgtgg |
4627704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 4572408 - 4572524
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
4572408 |
tattcagtgtttacataggttatgtgaaaacctctaaggtgaagaaattttgctagttgcaacaatggattgatatggccttgaactggatatgggatta |
4572507 |
T |
|
| Q |
109 |
tcacaacatgtggtttt |
125 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
4572508 |
acacagcatgtggtttt |
4572524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 4612404 - 4612288
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4612404 |
tattcggtgttgacgaatgttatgtgaaagcctctaaggtgaagaagttttgctagtttgattaatggattgatatggccttgaactggatatggaatta |
4612305 |
T |
|
| Q |
109 |
tcacaacatgtggtttt |
125 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
4612304 |
acactgcatgtggtttt |
4612288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 4575897 - 4575992
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatgga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| | | ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
4575897 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatgga |
4575992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 4569518 - 4569607
Alignment:
| Q |
15 |
gtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatgga |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||| |||||||||| |
|
|
| T |
4569518 |
gtgttgacaaaggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatggccttgaagtggatatgga |
4569607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4517782 - 4517894
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||| | ||||| ||||||||||||||||||| |||||||||| | | |
|
|
| T |
4517782 |
tattcggtgttgacaaaggttatgtgaaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatggagtta |
4517881 |
T |
|
| Q |
109 |
tcacaacatgtgg |
121 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
4517882 |
tcactgcatgtgg |
4517894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4581456 - 4581568
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
4581456 |
tattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatca |
4581555 |
T |
|
| Q |
109 |
tcacaacatgtgg |
121 |
Q |
| |
|
||| ||||||| |
|
|
| T |
4581556 |
acactgcatgtgg |
4581568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 4587074 - 4587190
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||||||| || |||||| | |||||||||||||||||||||||||||||| |||| || | |
|
|
| T |
4587074 |
tattcagtgtttacaaaggttatgtgaaatcctcgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggatta |
4587173 |
T |
|
| Q |
109 |
tcacaacatgtggtttt |
125 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
4587174 |
acacagcatgaggtttt |
4587190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 4482307 - 4482451
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| || ||| ||| | | ||||||| |||||||||||||||| ||||| ||||| ||| |
|
|
| T |
4482307 |
tattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtca |
4482406 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgata |
153 |
Q |
| |
|
||| ||||||||||| | | ||||||||| | ||| ||||||| |
|
|
| T |
4482407 |
acactgcatgtggttttttttctgcaaagttactcatctttgata |
4482451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 4462649 - 4462776
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| || ||| ||||| | ||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
4462649 |
tattcagtgttgacaaaggttatgtgaaaacctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatca |
4462748 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaa |
136 |
Q |
| |
|
|||| ||||||| ||| | |||||||| |
|
|
| T |
4462749 |
acacagcatgtggctttgtctttgcaaa |
4462776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 4488883 - 4488789
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatgg |
103 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| || ||| ||||| | ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
4488883 |
tattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatgg |
4488789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 4562103 - 4562199
Alignment:
| Q |
9 |
tattcagtgttaacaaaggtt-atgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatgga |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||| || ||||||| | | ||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
4562103 |
tattcagtgttaacaaaggtttatgtgaaagcctcttaggtgaagcagttttgctattttcaacaatgcattgatatgaccttgaactggaaatgga |
4562199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 4255481 - 4255395
Alignment:
| Q |
35 |
aaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
121 |
Q |
| |
|
||||||| |||| ||||| | ||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
4255481 |
aaagcctttaagatgaagtaattttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtgg |
4255395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 4599611 - 4599704
Alignment:
| Q |
15 |
gtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| || |||||||||| ||| |||||||||||||||| |||||||||| ||| ||| ||||||||| ||||||| ||| ||||||||| |
|
|
| T |
4599611 |
gtgttcacgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaatagattgatatttccttgaattggtaatggaatca |
4599704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1282875 - 1283091
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1282875 |
tattcagtattaacaaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatca |
1282974 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgaggaacaagtgataa |
208 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||||||||||| | || ||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
1282975 |
acacagcatgtggttttgtgtttgcaaagttgaccatttttgataattctctacttggatgttatgcgtgcaagatatgaggttgagaaacaagtgataa |
1283074 |
T |
|
| Q |
209 |
gcatgtgctttaataga |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1283075 |
gcatgtgctttaataga |
1283091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1200 - 1416
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||| |||||| ||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
1200 |
tattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatga |
1299 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgaggaacaagtgataa |
208 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||| | | ||| |||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
1300 |
acacagcatgtgattttctgtttgcaaagtttcccatttttgataattatctatttggatgttatgtgtgcaagatatgaggttgagaaacaagtgataa |
1399 |
T |
|
| Q |
209 |
gcatgtgctttaataga |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1400 |
gcatgtgctttaataga |
1416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1675963 - 1676179
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||| |||||| ||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
1675963 |
tattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatga |
1676062 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaagtttcccatttttgataattctatcttttgatgttatgtttgcaagttatgaggttgaggaacaagtgataa |
208 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||| | | ||| |||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
1676063 |
acacagcatgtgattttctgtttgcaaagtttcccatttttgataattatctatttggatgttatgtgtgcaagatatgaggttgagaaacaagtgataa |
1676162 |
T |
|
| Q |
209 |
gcatgtgctttaataga |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1676163 |
gcatgtgctttaataga |
1676179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 20862496 - 20862380
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
|||||||| || ||||| ||||||| |||||||||||||||||| || ||||||||| | |||| |||||||||||| ||||||| |||||||||| | | |
|
|
| T |
20862496 |
tattcagtattgacaaatgttatgtaaaagcctctaaggtgaagtagttttgctagttttaacattggattgatatgaccttgaagtggatatggagtta |
20862397 |
T |
|
| Q |
109 |
tcacaacatgtggtttt |
125 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
20862396 |
acactgcatgtggtttt |
20862380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 2266 - 2393
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2266 |
tattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaataatggattgatatggccttgaactggatatggaatca |
2365 |
T |
|
| Q |
109 |
tcacaacatgtggttttctgtttgcaaa |
136 |
Q |
| |
|
|||| ||||||||||| |||||||||| |
|
|
| T |
2366 |
acacagcatgtggttttttgtttgcaaa |
2393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 3088199 - 3088299
Alignment:
| Q |
21 |
acaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtg |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||| ||||| ||||||| |||||||||||||| |||| |||||| |
|
|
| T |
3088199 |
acaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtg |
3088298 |
T |
|
| Q |
121 |
g |
121 |
Q |
| |
|
| |
|
|
| T |
3088299 |
g |
3088299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 24104537 - 24104646
Alignment:
| Q |
9 |
tattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtctgaacaatggattgatatggccttgaactggatatggaatca |
108 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||| |||| |||||||| |
|
|
| T |
24104537 |
tattcggtgttcacgaaggttatgtgaaagcctctaaggtgaagaagctttcctagtttgaacaatgcattgatatgaccttgaaatggagctggaatca |
24104636 |
T |
|
| Q |
109 |
tcacaacatg |
118 |
Q |
| |
|
|||| |||| |
|
|
| T |
24104637 |
acacagcatg |
24104646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University