View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5895_low_1 (Length: 930)
Name: NF5895_low_1
Description: NF5895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5895_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 864; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 23 - 923
Target Start/End: Complemental strand, 45068181 - 45067281
Alignment:
| Q |
23 |
aactttttatccttcattataaagtttttaaaacaatttttgtattagactcacattcatagtgctgattaattaagaagataagcaaatatggagaaga |
122 |
Q |
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| T |
45068181 |
aactttttatccttcattataaagtttttaaaacaatttttgtattagactcacattcatagtgctgattaattaagaagataagcaaatatggagaaga |
45068082 |
T |
|
| Q |
123 |
acgaggaacaaaattgaagtcataaaccctaagtcagttgtttgtgttttctttttggatcatgaatgagaagttataaatgtttattgcttgtgttaca |
222 |
Q |
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| T |
45068081 |
atgaggaacaaaattgaagtcataaaccctaagtcagttgtttgtgttttctttttggatcatgaatgagaagttataaatgtttattgcttgtgttaca |
45067982 |
T |
|
| Q |
223 |
ggcattcttccagcgttggtggagagaacaaagtggggaagttcagaaaatagtcaagcagctggtcaactctggtcaattggagttcatgtattcatcc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45067981 |
ggcattcttccagcgttggtggagagaacaaagtggggaagttcagaaaatagtcaagcagctggtcaactctggtcaattggagttcatgtattcatct |
45067882 |
T |
|
| Q |
323 |
atctgactttccattattgcatgtcaaggaaaattgatctttgatcattatccatgtgcttgattgtagtataataggattcagttacaatgacatcaaa |
422 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45067881 |
atctgactttccattattgcatgtcaaagaaaattgatctttgatcattatccatgtgcttgattgtagtataataggattcagttacaatgacatcaaa |
45067782 |
T |
|
| Q |
423 |
tgattcctaagatttctgattgcagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggaca |
522 |
Q |
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| T |
45067781 |
tgattcctaagatttctgattgcagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggaca |
45067682 |
T |
|
| Q |
523 |
tcgattcattaaagaagtattcgggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagag |
622 |
Q |
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| T |
45067681 |
tcgattcatcaaagaagtattcgggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagag |
45067582 |
T |
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| Q |
623 |
gtaccattttgttaaattgtaagaaacatataaatttgatgatgagaaaaagaatgattttgaagttgatttgcctataagtctattcattttttcacac |
722 |
Q |
| |
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| T |
45067581 |
gtaccattttgttaaattgtaagaaacatataaatttgatgatgagaaaaagaatgattttgaagttgatttgcctataagtctattcattttttcacac |
45067482 |
T |
|
| Q |
723 |
annnnnnnacttgtttcttaagcactacccttgttggcataggttggatttgactcattattctttgcacggattgattaccaagatagagctaagagaa |
822 |
Q |
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| T |
45067481 |
atttttttacttgtttcttaagcactacccttgttggcataggttggatttgactcattattctttgcacggattgattaccaagatagagctaagagaa |
45067382 |
T |
|
| Q |
823 |
aagatgaaaaaagtcttgaagttgtgtggcagggctctaagagctttggttcatctgcacaggtgattgattcaaagtggtttgtgtttatgatgatgat |
922 |
Q |
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| T |
45067381 |
aagatgaaaaaagtcttgaagttgtgtggcagggctctaagagctttggttcatctgcacaggtgattgattcaaagtggtttgtgtttatgatgatgat |
45067282 |
T |
|
| Q |
923 |
g |
923 |
Q |
| |
|
| |
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|
| T |
45067281 |
g |
45067281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 445 - 618
Target Start/End: Complemental strand, 32385657 - 32385484
Alignment:
| Q |
445 |
cagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggacatcgattcattaaagaagtattc |
544 |
Q |
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|||||| ||||| ||||||||||| |||||||| | | |||||||| ||||||||||||||||| || |||||||| ||||| | ||||| | ||| |
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| T |
32385657 |
cagaaacggtggcatgtgtatgcatgatgaggcagtagttcattacatagacatgattgatcagactacacttggacaccgatttctgaaagaggagttc |
32385558 |
T |
|
| Q |
545 |
gggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagc |
618 |
Q |
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| | ||||||||||| || ||||||||||| || |||||||||||||| |||||||| || || |||||||| |
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| T |
32385557 |
gatttgactccaagaattggttggcaaattgacccgtttggacattctgctgtgcaggcttatttattgggagc |
32385484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 446 - 635
Target Start/End: Complemental strand, 32400016 - 32399827
Alignment:
| Q |
446 |
agaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggacatcgattcattaaagaagtattcg |
545 |
Q |
| |
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||||||||||||||||| ||||| || ||||| | | |||||||||||| ||||||||||||| || ||||| |||| ||| || ||||| | || | |
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| T |
32400016 |
agaaatggtggtatgtgcatgcatgacgaggccaccccgcattacattgacctgattgatcagaccactcttgggcatcaatttatcaaagatgagtttg |
32399917 |
T |
|
| Q |
546 |
ggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagaggtaccattttgtt |
635 |
Q |
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| | | ||||||| | || ||||| |||||||| ||||| ||||||||||| ||||| |||||| | ||||| ||||||| || ||||| |
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| T |
32399916 |
gtaagaatccaagagttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctgaggtacgatattgtt |
32399827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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