View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896-Insertion-3 (Length: 654)
Name: NF5896-Insertion-3
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 5e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 432 - 626
Target Start/End: Complemental strand, 16149879 - 16149685
Alignment:
| Q |
432 |
gttgataaagaaaaaagactagagaatatattttggtctccacctcattgctttgagttgtaccaagagtatggagatgttgttgcatttgataatacct |
531 |
Q |
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| T |
16149879 |
gttgataaagaaaaaagactagaaaatatattttggtctccacctcattgttttgaattgtaccaacagtatggagatgctgttgcatttgatactactt |
16149780 |
T |
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| Q |
532 |
acagggtgaatttttataatatgccttttggcatttttgttggaatcgacaatcacggaaggacaatattgtttggttgcgcgctcattcgaaat |
626 |
Q |
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| T |
16149779 |
acaaggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatattgtttggttgtgcgctcattcgaaat |
16149685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 214 - 414
Target Start/End: Complemental strand, 16150305 - 16150105
Alignment:
| Q |
214 |
tctaaagaacaacgaaatagacaatcttcaaggtgtgcatgcaaagcgagcatggcaatcaaattgaagaaatcctttgagatttttccaaaagaatgga |
313 |
Q |
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| T |
16150305 |
tctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttcgagatttttccagaagagtggc |
16150206 |
T |
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| Q |
314 |
aagttattgaacttaaatccaaccacaatcatgatttactacctccagatcaagtgcgcttccttgcattttaccgcaacatttctgaggaagatgagaa |
413 |
Q |
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| T |
16150205 |
aggtttttgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaagaagagaa |
16150106 |
T |
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| Q |
414 |
g |
414 |
Q |
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| T |
16150105 |
g |
16150105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 16150475 - 16150403
Alignment:
| Q |
31 |
ggcaatgtgttctaaatgaggaagaagctttcggattttatgagaattatg-caaaaggagtgggttctcaat |
102 |
Q |
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| T |
16150475 |
ggcagtgttttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaaggagtgggttctcaat |
16150403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 3e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 214 - 414
Target Start/End: Original strand, 23302006 - 23302206
Alignment:
| Q |
214 |
tctaaagaacaacgaaatagacaatcttcaaggtgtgcatgcaaagcgagcatggcaatcaaattgaagaaatcctttgagatttttccaaaagaatgga |
313 |
Q |
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| T |
23302006 |
tctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttagagatttttccagaagagtggc |
23302105 |
T |
|
| Q |
314 |
aagttattgaacttaaatccaaccacaatcatgatttactacctccagatcaagtgcgcttccttgcattttaccgcaacatttctgaggaagatgagaa |
413 |
Q |
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| T |
23302106 |
aggttattgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaagaagagaa |
23302205 |
T |
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| Q |
414 |
g |
414 |
Q |
| |
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| T |
23302206 |
g |
23302206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 520 - 626
Target Start/End: Original strand, 23302268 - 23302374
Alignment:
| Q |
520 |
ttgataatacctacagggtgaatttttataatatgccttttggcatttttgttggaatcgacaatcacggaaggacaatattgtttggttgcgcgctcat |
619 |
Q |
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|||||| ||| |||| ||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
23302268 |
ttgatactacttacaaggtaaatacttataatatgccttttggcatctttgttgtaatcgacaatcacggcagaacaatattgtttggttgtgcgctcat |
23302367 |
T |
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| Q |
620 |
tcgaaat |
626 |
Q |
| |
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||||||| |
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| T |
23302368 |
tcgaaat |
23302374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 23301836 - 23301908
Alignment:
| Q |
31 |
ggcaatgtgttctaaatgaggaagaagctttcggattttatgagaattatg-caaaaggagtgggttctcaat |
102 |
Q |
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|||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
23301836 |
ggcaatgttttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaaggagtgggttctcaat |
23301908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 214 - 407
Target Start/End: Complemental strand, 4652897 - 4652712
Alignment:
| Q |
214 |
tctaaagaacaacgaaatagacaatcttcaaggtgtgcatgcaaagcgagcatggcaatcaaattgaagaaatcctttgagatttttccaaaagaatgga |
313 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||| || |||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
4652897 |
tctaaagaacaacgaaatagacaatctt--------ggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggc |
4652806 |
T |
|
| Q |
314 |
aagttattgaacttaaatccaaccacaatcatgatttactacctccagatcaagtgcgcttccttgcattttaccgcaacatttctgaggaaga |
407 |
Q |
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| | ||||||| ||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||| |||||| ||||||| |
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| T |
4652805 |
aggatattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgcaaaatttctaaggaaga |
4652712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 431 - 584
Target Start/End: Complemental strand, 4652480 - 4652322
Alignment:
| Q |
431 |
tgttgataaagaaaaaagactagagaatatattttggtctccacctcatt-----gctttgagttgtaccaagagtatggagatgttgttgcatttgata |
525 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||| ||||||||| ||||||||| |||||||||||| | |
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| T |
4652480 |
tgttgataaagaaaaaagactagaaaatatattttggtctccacatcattatattgttttgaattgtaccaacgtaatggagatgatgttgcatttgaga |
4652381 |
T |
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| Q |
526 |
atacctacagggtgaatttttataatatgccttttggcatttttgttggaatcgacaat |
584 |
Q |
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| T |
4652380 |
ctatttacaaggtacatacttataatatgccttttggcatttttgttggaatcgacaat |
4652322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 4653058 - 4652995
Alignment:
| Q |
40 |
ttctaaatgaggaagaagctttcggattttatgagaattatg-caaaaggagtgggttctcaat |
102 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |
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| T |
4653058 |
ttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaatgagtgggttctcaat |
4652995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 1000448 - 1000408
Alignment:
| Q |
64 |
gattttatgagaattatgc-aaaaggagtgggttctcaatc |
103 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||| |
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| T |
1000448 |
gattttatgagaattatgcgaaaaagagtgggttctcaatc |
1000408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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