View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896-Insertion-5 (Length: 311)
Name: NF5896-Insertion-5
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 476259 - 476518
Alignment:
| Q |
8 |
aaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagatatcactttgtgtcaaa |
107 |
Q |
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| T |
476259 |
aaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagatatcactttgtgtcaaa |
476358 |
T |
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| Q |
108 |
gacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggattacacaatgatgata |
207 |
Q |
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| T |
476359 |
gacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggattacacaatgatgata |
476458 |
T |
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| Q |
208 |
ctgaagaatatattgagcctttgctggcaagttatttgacatccataaggccagatataa |
267 |
Q |
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| T |
476459 |
ctgaagaatatattgagcctttgttggcaagttatttgacatccataaggccagatataa |
476518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 476539 - 476583
Alignment:
| Q |
267 |
agtcaatttctagattcaccaacctcagcacacttccctagtttg |
311 |
Q |
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| T |
476539 |
agtcaatttctagattcaccaacctcagcacacttccctagtttg |
476583 |
T |
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