View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896-Insertion-7 (Length: 223)
Name: NF5896-Insertion-7
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896-Insertion-7 |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 26832778 - 26832564
Alignment:
| Q |
9 |
aatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832778 |
aatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttg |
26832679 |
T |
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| Q |
109 |
ctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832678 |
ctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctg |
26832579 |
T |
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| Q |
209 |
gaagtttggtaattt |
223 |
Q |
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||||||||||||||| |
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| T |
26832578 |
gaagtttggtaattt |
26832564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 26786057 - 26785847
Alignment:
| Q |
12 |
ataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgcta |
111 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |||| ||||||||| |||||||| | |
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| T |
26786057 |
ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca |
26785958 |
T |
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| Q |
112 |
tctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaa |
211 |
Q |
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| T |
26785957 |
tctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttcaggctcgctggaa |
26785858 |
T |
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| Q |
212 |
gtttggtaatt |
222 |
Q |
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||||||||||| |
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| T |
26785857 |
gtttggtaatt |
26785847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 26822698 - 26822488
Alignment:
| Q |
12 |
ataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgcta |
111 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |||| ||||||||| |||||||| | |
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| T |
26822698 |
ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca |
26822599 |
T |
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| Q |
112 |
tctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaa |
211 |
Q |
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|||||||||||||||||||||| |||||||| ||||| | ||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
26822598 |
tctttgatgctgattttcaacctgaacctgactttctccgccgaacgatcccttttcttgtcaataatcctgaaattggtctcgttcaggctcgctggaa |
26822499 |
T |
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| Q |
212 |
gtttggtaatt |
222 |
Q |
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||||||||||| |
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| T |
26822498 |
gtttggtaatt |
26822488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 26791797 - 26791590
Alignment:
| Q |
12 |
ataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgcta |
111 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |||| ||||||||| |||||||| | |
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| T |
26791797 |
ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca |
26791698 |
T |
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| Q |
112 |
tctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaa |
211 |
Q |
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| T |
26791697 |
tctttgatgctgattttcaacctgaacctgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcgttcaagctcgctggaa |
26791598 |
T |
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| Q |
212 |
gtttggta |
219 |
Q |
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|||||||| |
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| T |
26791597 |
gtttggta |
26791590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 41546231 - 41546352
Alignment:
| Q |
12 |
ataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgcta |
111 |
Q |
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||||||||||| | ||||| |||||||||||||||||||| ||||| | || || |||||||| ||||||||||| |||| ||||| |||||||| | |
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| T |
41546231 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcca |
41546330 |
T |
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| Q |
112 |
tctttgatgctgattttcaacc |
133 |
Q |
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|||||||||||||||||||||| |
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| T |
41546331 |
tctttgatgctgattttcaacc |
41546352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 41917452 - 41917666
Alignment:
| Q |
9 |
aatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttg |
108 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||||||||||||| ||||||||| |||||| |
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| T |
41917452 |
aatataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgttg |
41917551 |
T |
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| Q |
109 |
ctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctg |
208 |
Q |
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| || ||||||||||||||||||||||| ||||||||| | ||||| ||| | || || | || |||||||||| ||||| ||| |||| ||||| || |
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| T |
41917552 |
caatatttgatgctgattttcaaccagagcctgattttttgtggcgtaccgtaccatttatggtgcataatcctgaaattgggcttattcaagctcgttg |
41917651 |
T |
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| Q |
209 |
gaagtttggtaattt |
223 |
Q |
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||| ||||||||||| |
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| T |
41917652 |
gaaatttggtaattt |
41917666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 20239218 - 20239043
Alignment:
| Q |
45 |
tacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgatt |
144 |
Q |
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||||||||||||||||| || || ||| | |||| ||||||||| || || ||||| ||||||| || ||||||||||||||| || ||||||| |
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| T |
20239218 |
tacaaagcaggtgcattgaaagaaggactaaaacgtagctatgtcaagcattgtgaatatgttgtcatatttgatgctgattttagtcctcctcctgatt |
20239119 |
T |
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| Q |
145 |
ttctttggcgaaccatccctttccttgttaataatcctgatattggtcttgttcaggctcgctggaagtttggtaa |
220 |
Q |
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||||| | || |||| ||||| |||||| ||||||||| |||| ||||||||| | ||| |||| |||||||| |
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| T |
20239118 |
ttcttagaagagccattccttttcttgttggtaatcctgaaattgctcttgttcaaggtcgttggagatttggtaa |
20239043 |
T |
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