View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_high_10 (Length: 320)
Name: NF5896_high_10
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 65 - 303
Target Start/End: Complemental strand, 33119395 - 33119157
Alignment:
| Q |
65 |
acatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctctccttacagctttggttttcatcatttgtactat |
164 |
Q |
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| T |
33119395 |
acatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctctccttatagctttggttttcatcatttgtactat |
33119296 |
T |
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| Q |
165 |
tgttatgttgtttgaaaattctgcttccttaatttccttttcagttgattcactcaaaactttgatctcagcttcaacttcctcaggtggataaatcttc |
264 |
Q |
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| T |
33119295 |
tgttatgttgtttgaaaattctgcttccttaatttccttttcagttgattcactcaaaactttgatctcagcttcaacttcctcaggtggataaatcttc |
33119196 |
T |
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| Q |
265 |
ttcaaaattgctatactttcctctttccttccctattac |
303 |
Q |
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| T |
33119195 |
ttcaaaattgctatactttcctctttccttccctattac |
33119157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 33116235 - 33116180
Alignment:
| Q |
76 |
ttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
131 |
Q |
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| T |
33116235 |
ttgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
33116180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 21559297 - 21559375
Alignment:
| Q |
73 |
gtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctctccttacagctttggttttca |
151 |
Q |
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| T |
21559297 |
gtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatataaacctcttctaactgttttggttttca |
21559375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 1084177 - 1084232
Alignment:
| Q |
76 |
ttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
131 |
Q |
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|||||||| |||||||||||||| ||| ||| |||||||||||||| |||||||| |
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| T |
1084177 |
ttgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
1084232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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