View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_high_16 (Length: 231)
Name: NF5896_high_16
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 8659942 - 8660142
Alignment:
| Q |
13 |
gcagagaaaaatggaagagactaagcaacttgctgtaaaaaactcctctaaattcaaggctcaagctgccaaggccagaaaacagaggtagtgaccgatt |
112 |
Q |
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| T |
8659942 |
gcagagaaaaatggaagagactaagcaacttgctgtaaaaaactcctctaaattcaaggctcaagctgccaaggccagaaaacagaggtagtgaccgatt |
8660041 |
T |
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| Q |
113 |
tcaatcattctcattgctgctgcatcaatgaattgtgctcattcattccttaaactttttcagcttttggtacggacaaggtcggcctcgttggcttggt |
212 |
Q |
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| T |
8660042 |
tcaatcattctcattgctgctgcatcaatgaattgtgctcattcattccttaaactttttcagcttttggtacggacaaggtcggcctcgttggcttggt |
8660141 |
T |
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| Q |
213 |
c |
213 |
Q |
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| T |
8660142 |
c |
8660142 |
T |
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