View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_high_17 (Length: 228)
Name: NF5896_high_17
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_high_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 35340744 - 35340967
Alignment:
| Q |
6 |
atgtgctgcagccatattaattatcca-cacaccatttcgttagagttagatataataacttcattgtgtttttggcgtagctcctctcatctgataatc |
104 |
Q |
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||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35340744 |
atgtgctgcagccatatcaattatagaacacaccatttcgttagagttagatataataactttattgtgtttttggcgtagctcctctcatctgataatc |
35340843 |
T |
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| Q |
105 |
attttggagacaatctctcgtgaaaatgtttaattgtagttcaccatgtagaaaaaataaacattactttccactgaacccaatattagcagcattatat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35340844 |
attttggagacaatctctcgtgaaaatgtttaattgtagttcaccatgtagaaaaaataaacattactttccacttaacccaatattagcagcattatat |
35340943 |
T |
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| Q |
205 |
cataccagacaaacaattcatgtt |
228 |
Q |
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|||||||||||||||||||||||| |
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| T |
35340944 |
cataccagacaaacaattcatgtt |
35340967 |
T |
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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 13580006 - 13580109
Alignment:
| Q |
6 |
atgtgctgcagccatattaattatccacacaccatttcgttagagttagatata--ataacttcattgtgtttttggcgtagctcctctcatctgataat |
103 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
13580006 |
atgtgctgcagccatatcaattctccacacaccatttcgttagagttagatataatataactttattgtgtttttggcgtagctcctctcatttgataat |
13580105 |
T |
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| Q |
104 |
catt |
107 |
Q |
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|||| |
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| T |
13580106 |
catt |
13580109 |
T |
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