View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_high_2 (Length: 659)
Name: NF5896_high_2
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 298 - 647
Target Start/End: Original strand, 43035581 - 43035928
Alignment:
| Q |
298 |
aaagtggctgtgaccgtggatgaatgcggcggttgtgggaacaagttgagtggagaaatatactaaacatcagagcggtcgcataacctatactacacta |
397 |
Q |
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| T |
43035581 |
aaagtggctgtgaccgtggatgaatgcggcggttgtgggaagaagttgagtggagaaatatactaaacatcagcgcggtcgcataacctatactacacta |
43035680 |
T |
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| Q |
398 |
tagagtgaagaaagaagaagcatata-tataatagaacagaataggttgaattggttttgcagcttgacttcttctactactgtccggttgttcattcaa |
496 |
Q |
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| T |
43035681 |
tagagtgaagaaagaagaagcatataatagaatagaacagaacaggttgaattggttttgcagcttgacttc---tactactgtccggttgttcattcaa |
43035777 |
T |
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| Q |
497 |
agagattatgagtcgttacgatagccgttcctccgaccccacttcctaccgcgaccgtagaaggtaactctaacctctctccaatttccactttctaggg |
596 |
Q |
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| T |
43035778 |
agagatcatgagtcgttacgatagccgttcctccgaccccacttcctaccgcgaccgtagaaggtaactctaacctctctccaatttccactttctaggg |
43035877 |
T |
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| Q |
597 |
tttcattcaatgctcttttctatttcctaatttcaatactctttttcttct |
647 |
Q |
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| T |
43035878 |
tttcattcaatgctcttttctatttcctaatttcaatactctttttcttct |
43035928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 43035215 - 43035279
Alignment:
| Q |
106 |
ttttggaaaataattcacaagttttgtcatatcacatagcaataatgagagcacatttttcttaa |
170 |
Q |
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| T |
43035215 |
ttttggaaaataattcacaagttttgtcatatcatatagcaataatgacagcacatttttcttaa |
43035279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 43035409 - 43035438
Alignment:
| Q |
279 |
gtccgtccgtccatagattaaagtggctgt |
308 |
Q |
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| T |
43035409 |
gtccgtccgtccatagattaaagtggctgt |
43035438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 4267747 - 4267712
Alignment:
| Q |
63 |
gtccaatatccaacattttacaaatcaaacacaccc |
98 |
Q |
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| T |
4267747 |
gtccaatatccaaccttttacaaatcaaacacaccc |
4267712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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