View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5896_low_1 (Length: 873)
Name: NF5896_low_1
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 26831756 - 26832197
Alignment:
| Q |
14 |
caaagggaaaatcacacatcgttaattaattaattcaacaaccttgcttcgatgcaaattaattgctatatagtttatcttatactgattagaaattatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26831756 |
caaagggaaaatcacacatcgttaattaattaattcaacaaccttgcttcgatgcaaattaattgctatatagtttatcttatactgattaggaattatt |
26831855 |
T |
|
| Q |
114 |
ttgcaggatagtacaaatattaattaatccgttcattactaatagatacataaacagttactggaaaatagggtccactattaaattaaaattgcacatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26831856 |
ttgcaggatagtacaaatattaattaatcagttcattactaatagatacataaacagttactggaaaatagggtccactattaaattaaaattgcacatg |
26831955 |
T |
|
| Q |
214 |
cagctgataatgtattagtaggagattagtctcttcttcaa-gtgtttcctaattaaggtgatgatgnnnnnnnnttaagttagtctatatgcactatat |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26831956 |
cagctgataatgtaatagtaggagattagtctcttcttcaatgtgtttcctaattaatgtgatgatgaaaaaaaattaagttagtctatatgcactatat |
26832055 |
T |
|
| Q |
313 |
catcctagtagttggaaattcatcgaaaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatattgcggacgtttgccgcagaaaccaa |
412 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26832056 |
catcctagtagttggaaattcatctaaaagtgaataagtgagaagtccgaggtttgaacctcaacccctggatattgcggacgtttgccgcagaaaccaa |
26832155 |
T |
|
| Q |
413 |
ctcaatgcagccataaatgaagtctaagcattcataatactc |
454 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
26832156 |
ctcaatgcagccataaatgaagtcttagcatccataatactc |
26832197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 496 - 873
Target Start/End: Original strand, 26832206 - 26832581
Alignment:
| Q |
496 |
catgacgatgacttctcatgacagactgtatccaaatcaaatatgcactcttttaagtagcattttccaccttttccatgttactttttatgcacacaaa |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832206 |
catgacgatgacttctcatgacagactgtatccaaatcaaatatgcactcttttaagtagcattttccaccttttccatgttactttttatgcacacaaa |
26832305 |
T |
|
| Q |
596 |
agaaaccaaccaaaggaagaaaataacactagacttctttggagatcataaaaagaagcatacgtggctaaataagaaagccattcaagtactaagtggg |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832306 |
agaaaccaaccaaaggaagaaaataacactagacttctttgaagatcat-aaaagaagcatacgtggctaaataagaaagccattcaagtactaagtggg |
26832404 |
T |
|
| Q |
696 |
acttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagattgattttattgttttgtagctctttatggcacaagttag |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
26832405 |
acttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagtttgattttattgttttgcggctctttagggcacaagttag |
26832504 |
T |
|
| Q |
796 |
catgacccctaaaagataaacaaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccag |
873 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832505 |
catga-ccctaaaagataaataaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccag |
26832581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 10629461 - 10629409
Alignment:
| Q |
328 |
aaattcatcgaaaggtgaataagtgagaagtccgaggttcgaacctcaacccc |
380 |
Q |
| |
|
||||||||| |||||||||||| || || |||||||||||||||| ||||||| |
|
|
| T |
10629461 |
aaattcatctaaaggtgaataaatgggatgtccgaggttcgaaccccaacccc |
10629409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 3218669 - 3218632
Alignment:
| Q |
340 |
aggtgaataagtgagaagtccgaggttcgaacctcaac |
377 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3218669 |
aggtgaataagtgagaagttcgaggttcgaacctcaac |
3218632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 24074590 - 24074542
Alignment:
| Q |
339 |
aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat |
387 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
24074590 |
aaggtgaataagtgaggtgtccgaggttcgaacttcaacccctacatat |
24074542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University