View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_low_11 (Length: 287)
Name: NF5896_low_11
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 580505 - 580772
Alignment:
| Q |
20 |
actttaacaccaactcacccaaatcttggcgcaatgttcatcttgaattccccctcctaacaaaatttgaggctaaaaactgcgcttggtttgttgatac |
119 |
Q |
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| T |
580505 |
actttaacaccgactcacccaaatcttggcgcaatgttcatcttgaattccctctcctaacaaaatttgaggctaaaaactgcgcttggtttgttgatac |
580604 |
T |
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| Q |
120 |
atctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcatttatctgcttccct |
219 |
Q |
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| T |
580605 |
atctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcatttatctgcttccct |
580704 |
T |
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| Q |
220 |
gattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtc |
287 |
Q |
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| T |
580705 |
gattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtc |
580772 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 1200763 - 1200807
Alignment:
| Q |
67 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggttt |
111 |
Q |
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| T |
1200763 |
ttcccactcctaacaaaatttgaggccaaaaactgtgattggttt |
1200807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 8192831 - 8192727
Alignment:
| Q |
67 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggtttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcg |
166 |
Q |
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| T |
8192831 |
ttcccacttctaacaaaatttgagaccaaaaactgcgcttggtttgttgatgcaacttgggtctctatagatgctcctctacttgaaagtatttccattg |
8192732 |
T |
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| Q |
167 |
aacat |
171 |
Q |
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| T |
8192731 |
aacat |
8192727 |
T |
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