View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5896_low_12 (Length: 257)
Name: NF5896_low_12
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 26832559 - 26832778
Alignment:
| Q |
16 |
aaaggaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832559 |
aaaggaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttg |
26832658 |
T |
|
| Q |
116 |
aaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832659 |
aaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtcc |
26832758 |
T |
|
| Q |
216 |
ctaacttcatactttatatt |
235 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
26832759 |
ctaacttcatactttatatt |
26832778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 26785847 - 26786057
Alignment:
| Q |
22 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||| |
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|
| T |
26785847 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatc |
26785946 |
T |
|
| Q |
122 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
26785947 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26786046 |
T |
|
| Q |
222 |
tcatactttat |
232 |
Q |
| |
|
||||||||||| |
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|
| T |
26786047 |
tcatactttat |
26786057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 26822488 - 26822698
Alignment:
| Q |
22 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||||| |||||||| ||||||||||| |
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| T |
26822488 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc |
26822587 |
T |
|
| Q |
122 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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|
| T |
26822588 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26822687 |
T |
|
| Q |
222 |
tcatactttat |
232 |
Q |
| |
|
||||||||||| |
|
|
| T |
26822688 |
tcatactttat |
26822698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 26791590 - 26791797
Alignment:
| Q |
25 |
taccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagc |
124 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
26791590 |
taccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagc |
26791689 |
T |
|
| Q |
125 |
atcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttca |
224 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||| |
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|
| T |
26791690 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
26791789 |
T |
|
| Q |
225 |
tactttat |
232 |
Q |
| |
|
|||||||| |
|
|
| T |
26791790 |
tactttat |
26791797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 41546352 - 41546231
Alignment:
| Q |
111 |
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||||||||||| |
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|
| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
211 |
tgtccctaacttcatactttat |
232 |
Q |
| |
|
| ||||| | ||||||||||| |
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|
| T |
41546252 |
tttcccttatctcatactttat |
41546231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 41917671 - 41917452
Alignment:
| Q |
16 |
aaaggaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttg |
115 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |||| ||| ||||| |||||||||| || | || || | ||| ||||| | ||||||||| |||||||| |
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| T |
41917671 |
aaagaaaattaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttg |
41917572 |
T |
|
| Q |
116 |
aaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtcc |
215 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||||||||| |
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|
| T |
41917571 |
aaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtcc |
41917472 |
T |
|
| Q |
216 |
ctaacttcatactttatatt |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41917471 |
ctaacttcatactttatatt |
41917452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 20239043 - 20239218
Alignment:
| Q |
24 |
ttaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcag |
123 |
Q |
| |
|
|||||||| |||| ||| | ||||||||| |||| ||||||||| |||||| ||||| |||| || | |||||||||||| || |||||||| |
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|
| T |
20239043 |
ttaccaaatctccaacgaccttgaacaagagcaatttcaggattaccaacaagaaaaggaatggctcttctaagaaaatcaggaggaggactaaaatcag |
20239142 |
T |
|
| Q |
124 |
catcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgta |
199 |
Q |
| |
|
||||||| || ||||||| ||||| || || ||||||||| |||| | ||| || || ||||||||||||||||| |
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|
| T |
20239143 |
catcaaatatgacaacatattcacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgta |
20239218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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