View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5896_low_13 (Length: 247)

Name: NF5896_low_13
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5896_low_13
NF5896_low_13
[»] chr2 (6 HSPs)
chr2 (1-155)||(26458103-26458257)
chr2 (155-238)||(31211880-31211963)
chr2 (171-238)||(45327420-45327487)
chr2 (164-238)||(31193244-31193318)
chr2 (155-204)||(40400909-40400958)
chr2 (183-222)||(28860834-28860873)
[»] chr4 (7 HSPs)
chr4 (155-238)||(36050730-36050813)
chr4 (155-238)||(36053989-36054072)
chr4 (155-238)||(24733683-24733766)
chr4 (157-229)||(12638086-12638158)
chr4 (155-238)||(27387687-27387770)
chr4 (155-235)||(55322334-55322414)
chr4 (155-188)||(10129632-10129665)
[»] chr1 (5 HSPs)
chr1 (155-238)||(18583886-18583969)
chr1 (155-238)||(23405475-23405558)
chr1 (155-238)||(21075941-21076024)
chr1 (154-235)||(16544449-16544530)
chr1 (154-227)||(25541114-25541181)
[»] chr7 (8 HSPs)
chr7 (154-238)||(6102969-6103054)
chr7 (153-229)||(41712368-41712444)
chr7 (155-238)||(42513062-42513145)
chr7 (155-238)||(30452764-30452847)
chr7 (155-238)||(30456373-30456456)
chr7 (155-222)||(49017210-49017277)
chr7 (155-206)||(4257365-4257416)
chr7 (165-238)||(11206538-11206611)
[»] chr6 (7 HSPs)
chr6 (155-238)||(33242915-33242998)
chr6 (155-238)||(7422714-7422797)
chr6 (155-238)||(7426653-7426736)
chr6 (154-238)||(4834786-4834870)
chr6 (155-238)||(7415706-7415789)
chr6 (155-238)||(13886608-13886691)
chr6 (155-188)||(16389217-16389250)
[»] chr5 (5 HSPs)
chr5 (155-238)||(24108765-24108848)
chr5 (164-238)||(671529-671603)
chr5 (155-235)||(10321869-10321949)
chr5 (153-238)||(41709567-41709652)
chr5 (154-196)||(8123637-8123679)
[»] chr3 (8 HSPs)
chr3 (155-238)||(14029394-14029477)
chr3 (155-238)||(36326557-36326640)
chr3 (155-196)||(19798051-19798092)
chr3 (155-196)||(19798296-19798337)
chr3 (155-192)||(1830902-1830939)
chr3 (155-196)||(18319509-18319550)
chr3 (155-186)||(30911613-30911644)
chr3 (155-192)||(30912148-30912185)
[»] chr8 (6 HSPs)
chr8 (157-235)||(11825070-11825148)
chr8 (155-238)||(44762034-44762117)
chr8 (155-238)||(44765341-44765424)
chr8 (157-223)||(1495750-1495816)
chr8 (157-235)||(23090074-23090152)
chr8 (155-188)||(32519623-32519656)
[»] scaffold0041 (1 HSPs)
scaffold0041 (81-155)||(15618-15688)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 26458257 - 26458103
Alignment:
Q  1 tatggaactggaaattgcattgttaagttgatattttttctataattaaataaaacgaaccagattgtcctgttaagttgacactattccaattgtggcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  26458257 tatggaactggaaattgcattgttaagttgatattttttctataattaaataaaacgaacgagattgtcctgttaagttgacactagtccaattgtggcg 26458158  T
Q  101 gttgtgagttgtgagcctgccagactaagtggttttctcttctatctgcttattt 155  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26458157 gttgtgaattgtgagcctgccagactaagtggttttctcttctatctgcttattt 26458103  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 31211963 - 31211880
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaagaaaattcattatatt 31211880  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 45327420 - 45327487
Alignment:
Q  171 gagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  45327420 gagtagggatcacactccagaaattaagagagaaaattagagataaaagaaaagaaatttattatatt 45327487  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 31193318 - 31193244
Alignment:
Q  164 ccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||  ||||| ||||||||    
T  31193318 ccaattcgagtagggatcacactctagaaattaagagagaaaactagagatgaaagaaagaaaatttattatatt 31193244  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 40400909 - 40400958
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaa 204  Q
    ||||| ||| ||||||||||||||||||||||||||||||| ||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaaatttagagagaa 40400958  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 28860873 - 28860834
Alignment:
Q  183 cactccagaaattaagagagaaaactagagataaaagaaa 222  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  28860873 cactccagaaattaagagagaaaactagagacagaagaaa 28860834  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 36050813 - 36050730
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaattcattatatt 36050730  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 36054072 - 36053989
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaagaaaagaaattcattatatt 36053989  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 24733766 - 24733683
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||| ||||||||| |||||||||||||||  ||| ||||||||||||||||||| |||||||||| |||||||||||||||    
T  24733766 tgataccacccaattcaagtagggatcacactttagatattaagagagaaaactagatataaaagaaaggaaattcattatatt 24733683  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 12638158 - 12638086
Alignment:
Q  157 atacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaatt 229  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  12638158 atacgacccaattcgagtaggtatcgcactccagaaattaagagagaaatctagatataaaagaaaggaaatt 12638086  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 27387770 - 27387687
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||| || ||||||||||||||||||||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggag-aaactagagatgaaggaaaagaaattcattatatt 27387687  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 55322334 - 55322414
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattat 235  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||   || |||||||||||||||| ||||||||||||    
T  55322334 tgatacgacccaattcgagtagggatcacactccagaatttagaagtagaagctagagataaaagaaaggaaattcattat 55322414  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 10129632 - 10129665
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactcc 188  Q
    ||||||||||||||||||||||||||||||||||    
T  10129632 tgatacgacccaattcgagtagggatcacactcc 10129665  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 18583886 - 18583969
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaagaaaggaaattcagtatatt 18583969  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 23405475 - 23405558
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||| ||||||||||||||||||||| ||| || ||| |||||||||| || |||||  ||||||||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggag-aaactagagaaaagagaaagaaaattcattatatt 23405558  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 21075941 - 21076024
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||| | ||||||||||||||| ||||||||||| |||  ||||| |||||| |||||||||||| |||||||| ||||||    
T  21075941 tgatacgatcaaattcgagtagggatgacactccagaatttagcgagag-aaactacagataaaagaaaggaaattcactatatt 21076024  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 16544530 - 16544449
Alignment:
Q  154 ttgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattat 235  Q
    |||||||| || |||| || ||| ||||||||| ||||||||||   ||||||||| |||||||||||| ||||||| ||||    
T  16544530 ttgatacggcctaatttgaatagcgatcacacttcagaaattaaagaagaaaactaaagataaaagaaaggaaattcgttat 16544449  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 25541114 - 25541181
Alignment:
Q  154 ttgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaa 227  Q
    |||||||||| |||||  |||||||||||||||| ||     ||||||||||||||||||||||| ||||||||    
T  25541114 ttgatacgacacaatttaagtagggatcacactctag-----aagagagaaaactagagataaaa-aaaagaaa 25541181  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 6103054 - 6102969
Alignment:
Q  154 ttgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaag-aaaagaaattcattatatt 238  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  6103054 ttgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatt 6102969  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 41712444 - 41712368
Alignment:
Q  153 tttgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaatt 229  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  41712444 tttgatacgacccaattcgagtaaggatcacactccaaaaattaagagagaaaactagagacaaaagaaaggaaatt 41712368  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 42513062 - 42513145
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| || |||||  ||||||||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggag-aaactagagaaaagagaaagaaaattcattatatt 42513145  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 30452847 - 30452764
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||| || |||||  ||||||||||||||    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggag-aaactagagaaaagagaaagaaaattcattatatt 30452764  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 30456456 - 30456373
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||| || |||||  ||||||||||||||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggag-aaactagagaaaagagaaagaaaattcattatatt 30456373  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 49017277 - 49017210
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaa 222  Q
    |||||||||| ||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||    
T  49017277 tgatacgacctaattcgaatagggatcacactccataaattagagagag-aaactagagataaaagaaa 49017210  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 4257365 - 4257416
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaa 206  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  4257365 tgatacgacccaatatgagtagggatcacactccagaaattaagagataaaa 4257416  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 11206611 - 11206538
Alignment:
Q  165 caattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||| ||||||||||||||| ||| || ||| |||||||||| || |||||  ||||||||||||||    
T  11206611 caattcgagtagagatcacactccagaatttagagggag-aaactagagaaaagagaaagaaaattcattatatt 11206538  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 33242998 - 33242915
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagag-aaactagaaataaaagaaaagaaattcattatatt 33242915  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 7422797 - 7422714
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| || |||||  ||||||||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagag-aaactagagaaaagagaaagaaaattcattatatt 7422714  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 7426736 - 7426653
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||| ||| |||||| || |||||  ||||||||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagag-aaattagagaaaagagaaagaaaattcattatatt 7426653  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 4834870 - 4834786
Alignment:
Q  154 ttgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||| |||||||||||||||||||||| ||| || ||| |||||||||| || |||||  ||||||||||||||    
T  4834870 ttgatacgacccaatttgagtagggatcacactccagaatttagagggag-aaactagagaaaagagaaagaaaattcattatatt 4834786  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 7415789 - 7415706
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||| |||| | |||||||||||||||||||||||||| |||||| |||||||||| || |||||  ||||||||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagag-aaactagagaaaagagaaagaaaattcattatatt 7415706  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 13886691 - 13886608
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    ||||||||||||||| |||||||||||||||||||||| ||| || ||| |||||||||| || |||||  ||||||||||||||    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggag-aaactagagaaaagagaaagaaaattcattatatt 13886608  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 16389217 - 16389250
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactcc 188  Q
    ||||||||||||||||||||||||||||||||||    
T  16389217 tgatacgacccaattcgagtagggatcacactcc 16389250  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 24108848 - 24108765
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||  ||| |||||||||||||||    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaattaaggaagaaaactagagacaaacaaaaggaaattcattatatt 24108765  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 671603 - 671529
Alignment:
Q  164 ccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  671603 ccaattcgagttgggatcacacttcagaaattaagagagaaagctagagataaaagaaagaaaattcattatatt 671529  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 10321869 - 10321949
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaattaagagaga-aaactagagataaaagaaaagaaattcattat 235  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||||||| || |||||||||| ||||| ||||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactcca-taatttagagagataagctagagataagagaaaggaaattcattat 10321949  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 41709652 - 41709567
Alignment:
Q  153 tttgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| || ||| |||||| ||| || |||||  ||||||||||||||    
T  41709652 tttgatacgacccaattcgagtagagatcacactccagaatttagagggag-aaactatagaaaagagaaagaaaattcattatatt 41709567  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 8123679 - 8123637
Alignment:
Q  154 ttgatacgacccaattcgagtagggatcacactccagaaatta 196  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  8123679 ttgatacgacccaattcgagtatggatcacacttcagaaatta 8123637  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 14029477 - 14029394
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    ||||||| |||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||| |||||||||||||||    
T  14029477 tgatacggcccaattcgagtagggatcacactccagaatttagagtgag-aaactagagataaaagaaaggaaattcattatatt 14029394  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 36326640 - 36326557
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||| || |||||  ||||||||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggag-aaactagagaaaagagaaagaaaattcattatatt 36326557  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 19798051 - 19798092
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta 196  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  19798051 tgatacgacccgattcgagtagggatcacactccagaaatta 19798092  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 19798296 - 19798337
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta 196  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  19798296 tgatacgacccaattcgagtagggatcagactccagaaatta 19798337  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 1830939 - 1830902
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaa 192  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1830939 tgatacgacccaattcaagtagggatcacactccagaa 1830902  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 18319550 - 18319509
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta 196  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  18319550 tgatacgacccgattcgagtagggatcacactctagaaatta 18319509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 30911613 - 30911644
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacact 186  Q
    ||||||||||||||||||||||||||||||||    
T  30911613 tgatacgacccaattcgagtagggatcacact 30911644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 30912185 - 30912148
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaa 192  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  30912185 tgatacgactcaattcgagtacggatcacactccagaa 30912148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 11825148 - 11825070
Alignment:
Q  157 atacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattat 235  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||||||| || |||||||||||| |||||| |||||    
T  11825148 atacgactcaattcgaatagggatcacactccataaattaagagagaaaattaaagataaaagaaaggaaattgattat 11825070  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 44762117 - 44762034
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| |||||| ||| || |||||| ||||||||||||||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggag-aaactatagaaaagagaaaaaaaattcattatatt 44762034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 44765424 - 44765341
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactccagaaatta-agagagaaaactagagataaaagaaaagaaattcattatatt 238  Q
    |||||||||||||||||||||||||| ||||||||||| ||| || ||| |||||| ||| || |||||  ||||||||||||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggag-aaactatagaaaagagaaagaaaattcattatatt 44765341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 1495750 - 1495816
Alignment:
Q  157 atacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaa 223  Q
    |||||||||||||||| |||| ||| |||| || |||||| || |||||||||||||||||| ||||    
T  1495750 atacgacccaattcgaataggaatcgcacttcataaattatgaaagaaaactagagataaaaaaaaa 1495816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 23090152 - 23090074
Alignment:
Q  157 atacgacccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaagaaattcattat 235  Q
    |||| |||||||| || |||| ||| ||||||| |||||| |||||||||  ||||||||||||||  ||||| |||||    
T  23090152 atacaacccaatttgaataggaatcgcactccataaattatgagagaaaatcagagataaaagaaagaaaattgattat 23090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 32519623 - 32519656
Alignment:
Q  155 tgatacgacccaattcgagtagggatcacactcc 188  Q
    ||||| ||||||||||||||||||||||||||||    
T  32519623 tgataggacccaattcgagtagggatcacactcc 32519656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 15618 - 15688
Alignment:
Q  81 acactattccaattgtggcggttgtgagttgtgagcctgccagactaagtggttttctcttctatctgcttattt 155  Q
    |||||| | |||||||||||||||||| ||||||    |||||| | ||||||||||||||| || |||||||||    
T  15618 acactagttcaattgtggcggttgtgaattgtga----gccagattgagtggttttctcttcaatttgcttattt 15688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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