View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5896_low_15 (Length: 237)
Name: NF5896_low_15
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_15 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 35340967 - 35341199
Alignment:
| Q |
1 |
tcaacaaacaagtgcagtagttttaaacttgcaccaaaccaatgtttgcgttagttagatgttcttgtaagataaggttatagttaaggacatgtaagtt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35340967 |
tcaacaaataagtgcagtagttttaaacttgcaccaaaccaatgtttgcgtta----gatgttcttgtaagataaggttatagttaaggacatgtaagtt |
35341062 |
T |
|
| Q |
101 |
atagatacctacttttgtgatcatgtaccacaatgatagtgaacaaacaaattcacaatttatattaagctcactcctaaaccatttaatttcctcccgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
35341063 |
atagatacctacttttgtgatcatgtaccacaatgatagtgaacaaacaaattcacaatttatattaggctcgctcctaaaccatttaatttcctcccgc |
35341162 |
T |
|
| Q |
201 |
ttacaaagcttcatcaccacctccagtttgttgtttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341163 |
ttacaaagcttcatcaccacctccagtttgttgtttc |
35341199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 15492885 - 15492702
Alignment:
| Q |
54 |
gttagatgttcttgtaagataaggttatagttaaggacatgtaagttatagatacctacttttgtgatcatgtaccacaatgatagt-gaacaaacaaat |
152 |
Q |
| |
|
|||||||||||||||| |||||||||||| | | ||||||| |||| ||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15492885 |
gttagatgttcttgtaggataaggttatactcacggacatgcgagttttaggtacttacttttgtgatcatgtaccacaataatagtctaacaaacaaat |
15492786 |
T |
|
| Q |
153 |
tcacaatttatattaagctcactcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttc |
237 |
Q |
| |
|
|||||||| || ||||||||||| || ||||||||||||| |||| |||||| |||| ||||||| || || ||||| |||||| |
|
|
| T |
15492785 |
tcacaattcatgttaagctcactgcttaaccatttaattt-ctccaacttacagagctgcatcaccgccgcctgtttgctgtttc |
15492702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University