View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_low_4 (Length: 453)
Name: NF5896_low_4
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 592663 - 592240
Alignment:
| Q |
17 |
caatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaa |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
592663 |
caatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacactgcaa |
592564 |
T |
|
| Q |
117 |
cttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
592563 |
cttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggtatcaaacttctgagac |
592464 |
T |
|
| Q |
217 |
ttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggacta |
316 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
592463 |
ttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgttgttttctcaaacatgaaccaaatttacaggacta |
592364 |
T |
|
| Q |
317 |
tttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
592363 |
tttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgccttttgggtcgtgaagtt |
592264 |
T |
|
| Q |
417 |
cgtgacaagctcttcgatgatgtc |
440 |
Q |
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| T |
592263 |
cgtgacaagctcttcgatgatgtc |
592240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 29 - 440
Target Start/End: Original strand, 579785 - 580187
Alignment:
| Q |
29 |
tcatgtttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttgaattcat |
127 |
Q |
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||||||||||||| |||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
579785 |
tcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt--------tgaaaataaaattttacactgcaacttgaattcat |
579875 |
T |
|
| Q |
128 |
tatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttgg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
579876 |
tatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctgagacttgattgtttg |
579975 |
T |
|
| Q |
228 |
ttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagt |
327 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
579976 |
tttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgtt-atttctcaaacatgaaccaaatttacaggactatttctcaaagt |
580074 |
T |
|
| Q |
328 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagct |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |
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| T |
580075 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgtctcttgggtcgtgaagttcgtgacaagct |
580174 |
T |
|
| Q |
428 |
cttcgatgatgtc |
440 |
Q |
| |
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||||||||||||| |
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|
| T |
580175 |
cttcgatgatgtc |
580187 |
T |
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