View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_low_6 (Length: 431)
Name: NF5896_low_6
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 1172899 - 1172518
Alignment:
| Q |
19 |
attgagagttataatcgtcgtttaatttgcttgttattcacaattcttcactttgtttcaagtttctcactttcaggtatgcatattaaactcttaatat |
118 |
Q |
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| T |
1172899 |
attgagagttataatcgtcgttt-----gcttgttattcacaattcttcactttgtttcaagtttctcactttcaggtatgcatattaaactcttaatat |
1172805 |
T |
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| Q |
119 |
taatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgcctaagtaagtcagaatgccttatttatgattgatgtt |
218 |
Q |
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| T |
1172804 |
taatttcagcatgtatatatattatcgctatcgaatttattgtttgtttgttcatgcatgtgcctaagtaagtc-gaat-------ttattgtt--tgtt |
1172715 |
T |
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| Q |
219 |
tcaacatgttcaattcttaatattaattttaatatcaagttgatttgctaatccactcttgtaataggttgtcattaattggaccagtttttagggttac |
318 |
Q |
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| T |
1172714 |
t------gttcgattcttaatattaattttaatatcaagttgatttgctaatccattgt-gtaataggttgtcattaattggaccagtttttaggggtac |
1172622 |
T |
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| Q |
319 |
actttagattctcaattttcgtctcaccctttatataactccctttcctaaaccctaaaccctaccaatgactaaagttcaaaatctattttgcaggttc |
418 |
Q |
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| T |
1172621 |
actttagactctcaattctcatctcaccctttatataactccctttccaaaaccctaaaccctaccaatgactaaagttcaaaatctattttgcaggttc |
1172522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 1181907 - 1181795
Alignment:
| Q |
252 |
atcaagttgatttgctaatccactcttgtaataggttgtcattaattggaccagtttttagggttacactttagattctcaattttcgtctcacccttta |
351 |
Q |
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| T |
1181907 |
atcaagttgatttgctaatccattgtagtaataggtcgtcatt----ggacccgtttttagggctccacattagattctcagttctcttctcacctttta |
1181812 |
T |
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| Q |
352 |
tataactccctttccta |
368 |
Q |
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| T |
1181811 |
tatatctccctttccta |
1181795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 1182431 - 1182388
Alignment:
| Q |
141 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
184 |
Q |
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| T |
1182431 |
tatcgctatcgaatttattgtttgtttgttcatgcatgtgccta |
1182388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 1182525 - 1182462
Alignment:
| Q |
56 |
tcacaattcttcactttgtttcaagtttctca-ctttcagg--tatgcatattaaactcttaat |
116 |
Q |
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| T |
1182525 |
tcacaagtcttcactttgtttcaagtttctcacctttcaggtatatacatatttaattcttaat |
1182462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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