View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_low_7 (Length: 398)
Name: NF5896_low_7
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 14576606 - 14576236
Alignment:
| Q |
15 |
atcttcatcatacacactatcattaaggacaatcatcaacttcagcacaacatttcccttccacttcttcttcaacatcactatcatacctattgtcaag |
114 |
Q |
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| T |
14576606 |
atcttcatcatacacactatcattaaggacaatcatcaacttcagcacaacctttcccttccacttcttcttcaacatcactatcatacctattgtcaag |
14576507 |
T |
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| Q |
115 |
gccatctacatcaggactcaggagtttccacataaaactcagcaaattttttaccactatcatacctattgctcaagtgcattaatgttgtaatcaagag |
214 |
Q |
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| T |
14576506 |
gccatctacatcaggactcaggagtttccacataaaactcagcaaattttttaccactatcatacctattgctcaagtgcattaatgttgtaatcaagag |
14576407 |
T |
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| Q |
215 |
ttccgccaacaattttaaattcataaatatctactttacaatatacaaagcaagacaaagctaaacacaaattatcttactttgatatatttgagacatt |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14576406 |
ttccgccaacaactttaaattcataaatatctactttacaatatacaaagcaagacaaagctaaacacaaattatcttactttgatatatttgagacatt |
14576307 |
T |
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| Q |
315 |
cttgtcaggaattctttttgggggccatgtattgtctgttgcgaccaaaacttcccattccaccatacttc |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14576306 |
cttgtcaggaattctttttgggggccatgtattgtctgttgcgaccaaaacttcccattccaccatacttc |
14576236 |
T |
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