View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_low_8 (Length: 365)
Name: NF5896_low_8
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 33119747 - 33119400
Alignment:
| Q |
11 |
cacagaagccacaatttgattcatctttaagacaagtcatacaatcccatttagcagggtcaatagctttagagtaaccagggcaagtggaattgaagtt |
110 |
Q |
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| T |
33119747 |
cacagaagccacaatttgattcatctttaagacaagtcatacaatcccatttagcagggtcaatagctttagagtaaccagggcaagtggaattgaagtt |
33119648 |
T |
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| Q |
111 |
agcagtttctgttggactaataagtggtgaggtaatcgcagtctgatgaaaaacaacggtaagaagaattagcgatcctacaactcctgtcaaacttatt |
210 |
Q |
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| T |
33119647 |
agcagtttcagttggactaataagtggtgaggtaatcgcagtctgatgaaaaacaacggtaagaagaattagtgatcctacaactcctgtcaaacttatt |
33119548 |
T |
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| Q |
211 |
aaagcgagtttctttctcccgcttttttcaatcaagtacatgcttaaaatggaaccaaatacatttagtccagaagatatgagtgtcagaagaagagcag |
310 |
Q |
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| T |
33119547 |
aaagcgagtttctttct-ccgcttttttcaatcaattacatgcttaaaatggaaccaaatgcatttagtccagatgttatgagtgacagaagaagtgccg |
33119449 |
T |
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| Q |
311 |
atttattgtatacaaaatcggatcactgaataatagctggaatgtagta |
359 |
Q |
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| T |
33119448 |
tttgattggatgcaaaaccggctaactgaataatggctggactgtagta |
33119400 |
T |
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