View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5896_low_9 (Length: 364)
Name: NF5896_low_9
Description: NF5896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5896_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 476259 - 476619
Alignment:
| Q |
19 |
aaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagatatcactttgtgtcaaa |
118 |
Q |
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| T |
476259 |
aaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagatatcactttgtgtcaaa |
476358 |
T |
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| Q |
119 |
gacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggattacacaatgatgata |
218 |
Q |
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| T |
476359 |
gacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggattacacaatgatgata |
476458 |
T |
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| Q |
219 |
ctgaagaatatattgagcctttgctggcaagttatttgacatccataaggccagatata---------------------agtcaatttctagattcacc |
297 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
476459 |
ctgaagaatatattgagcctttgttggcaagttatttgacatccataaggccagatataatattccttgtgcaacaagtcagtcaatttctagattcacc |
476558 |
T |
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| Q |
298 |
aacctcagcacacttccctagtttgttcttttctcgtagctcttcactcgatattcttgga |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
476559 |
aacctcagcacacttccctagtttgttcttttctcgtagctcttcactcgatatacttgga |
476619 |
T |
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