View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897-Insertion-10 (Length: 410)
Name: NF5897-Insertion-10
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897-Insertion-10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 5178375 - 5177969
Alignment:
| Q |
8 |
agttttcctttctctctcaaatttttaactatggaagaaaatatgtgatcactaa----actttggcttttgttacattttatagtgtcatttatcttct |
103 |
Q |
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| T |
5178375 |
agttttcctttctctctcaaatttttaactatggaagaaaatatgtgatcactaactaaactttggcttttgttacattttatagtgtcatttatcttct |
5178276 |
T |
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| Q |
104 |
cctaggagttaacgctctttccaaatattgcatgtaaatttgctttatgttcaaaattttgtttctttaattaatgcacattaaattttattcaataaag |
203 |
Q |
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| T |
5178275 |
cctaggagttaacgctctttccaaatattgcatgtaaatttgctttatgttcaaaattttgtttctttaattaatgcacattaaattttattcaataaag |
5178176 |
T |
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| Q |
204 |
gcnnnnnnngagggaaaattgtaaaggaagttttgtaaagaaacggaaagtaaagctggcttctgttgttaagacttgtttttggtgtg-aaaaaatgca |
302 |
Q |
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| T |
5178175 |
gcaaaaaaagagggaaaattgtaaaggaagttttgtaaagaaacggaaagtaaagctggcttctgttgttaagacttg-ttttggtgtgaaaaaaatgca |
5178077 |
T |
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| Q |
303 |
atgaatgaatggtcatcacgtttagtgaggtgttattgttgtccttttttgtttgcatgaagaacaaatggcaaaatatgactaggattctcttttcttt |
402 |
Q |
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| T |
5178076 |
atgaatgaatggtcatcacgtttagtgaggtgttattgttgtccttttttgtttgcatggagaacaaatggcaaaatatgactaggattctcttttcttt |
5177977 |
T |
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| Q |
403 |
ccatatag |
410 |
Q |
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| T |
5177976 |
ccatatag |
5177969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 5177028 - 5176982
Alignment:
| Q |
364 |
gaacaaatggcaaaatatgactaggattctcttttctttccatatag |
410 |
Q |
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| T |
5177028 |
gaacaaatggaaaaatatgactagtattctctcttctttccatatag |
5176982 |
T |
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