View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897-Insertion-2 (Length: 1035)

Name: NF5897-Insertion-2
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897-Insertion-2
NF5897-Insertion-2
[»] chr8 (28 HSPs)
chr8 (8-491)||(41806110-41806592)
chr8 (491-731)||(30410246-30410486)
chr8 (491-728)||(28644562-28644799)
chr8 (490-816)||(30405651-30405961)
chr8 (491-686)||(33071918-33072113)
chr8 (491-686)||(42234656-42234851)
chr8 (491-686)||(38757003-38757186)
chr8 (206-442)||(41800036-41800270)
chr8 (490-644)||(43807485-43807641)
chr8 (491-644)||(43812044-43812199)
chr8 (489-644)||(202202-202361)
chr8 (489-644)||(317039-317198)
chr8 (490-644)||(197684-197842)
chr8 (490-644)||(312521-312679)
chr8 (19-204)||(42033969-42034154)
chr8 (847-1026)||(41805925-41806116)
chr8 (491-587)||(41945339-41945434)
chr8 (490-591)||(41949801-41949902)
chr8 (755-822)||(30410154-30410222)
chr8 (755-810)||(28644826-28644882)
chr8 (784-847)||(38757331-38757395)
chr8 (615-669)||(27435169-27435223)
chr8 (790-830)||(28644850-28644890)
chr8 (755-802)||(38757253-38757301)
chr8 (779-847)||(30410105-30410174)
chr8 (783-815)||(30405629-30405661)
chr8 (783-815)||(30410149-30410181)
chr8 (779-847)||(30405585-30405654)
[»] chr5 (34 HSPs)
chr5 (491-728)||(30695293-30695530)
chr5 (491-686)||(32485947-32486143)
chr5 (490-728)||(40367531-40367758)
chr5 (491-686)||(19502307-19502504)
chr5 (490-686)||(26336767-26336965)
chr5 (491-847)||(40371549-40371892)
chr5 (491-686)||(36632314-36632497)
chr5 (511-676)||(43384972-43385138)
chr5 (490-644)||(7099374-7099532)
chr5 (490-644)||(12023288-12023446)
chr5 (491-644)||(7103943-7104100)
chr5 (491-644)||(12018731-12018888)
chr5 (490-644)||(16798668-16798826)
chr5 (491-644)||(16794108-16794265)
chr5 (539-672)||(20830304-20830437)
chr5 (491-644)||(10274546-10274698)
chr5 (485-599)||(10277198-10277312)
chr5 (755-847)||(30695558-30695651)
chr5 (490-644)||(37682035-37682182)
chr5 (344-491)||(278541-278689)
chr5 (491-644)||(37658732-37658878)
chr5 (539-613)||(20808675-20808749)
chr5 (764-803)||(7099217-7099256)
chr5 (764-803)||(7103786-7103825)
chr5 (764-803)||(12019008-12019047)
chr5 (764-803)||(16798945-16798984)
chr5 (764-801)||(16794384-16794421)
chr5 (764-803)||(12023577-12023616)
chr5 (764-847)||(37658995-37659082)
chr5 (206-322)||(278393-278511)
chr5 (876-911)||(278834-278869)
chr5 (764-803)||(37682299-37682340)
chr5 (805-847)||(40367386-40367427)
chr5 (755-822)||(40367435-40367504)
[»] chr7 (23 HSPs)
chr7 (490-731)||(27761396-27761638)
chr7 (491-731)||(27756846-27757087)
chr7 (497-728)||(47419498-47419729)
chr7 (491-731)||(22901154-22901396)
chr7 (490-672)||(35705633-35705815)
chr7 (491-686)||(7466485-7466669)
chr7 (504-680)||(733634-733811)
chr7 (490-644)||(7940083-7940241)
chr7 (491-644)||(7944636-7944793)
chr7 (782-847)||(27757188-27757252)
chr7 (503-663)||(13828087-13828248)
chr7 (764-803)||(7939926-7939965)
chr7 (764-803)||(7944479-7944518)
chr7 (755-803)||(22901420-22901470)
chr7 (755-803)||(27757111-27757161)
chr7 (755-847)||(47419376-47419470)
chr7 (779-847)||(22901505-22901573)
chr7 (755-803)||(27761662-27761712)
chr7 (779-847)||(27761699-27761767)
chr7 (503-599)||(37355573-37355669)
chr7 (782-822)||(22901497-22901537)
chr7 (782-848)||(7939807-7939875)
chr7 (782-847)||(7944385-7944452)
[»] chr1 (11 HSPs)
chr1 (491-731)||(39793831-39794070)
chr1 (491-731)||(16588395-16588635)
chr1 (491-847)||(26311522-26311868)
chr1 (490-731)||(26316012-26316240)
chr1 (490-686)||(43591783-43591979)
chr1 (490-644)||(10504435-10504588)
chr1 (755-849)||(16588275-16588370)
chr1 (755-847)||(26316253-26316348)
chr1 (755-802)||(39794097-39794145)
chr1 (793-847)||(39794198-39794250)
chr1 (793-847)||(39796802-39796854)
[»] chr3 (22 HSPs)
chr3 (490-731)||(21847108-21847351)
chr3 (490-731)||(21850198-21850441)
chr3 (491-686)||(9105275-9105470)
chr3 (491-686)||(11004365-11004560)
chr3 (490-686)||(43547722-43547920)
chr3 (491-686)||(9697586-9697783)
chr3 (490-644)||(54171924-54172082)
chr3 (490-644)||(54167344-54167502)
chr3 (491-644)||(39399127-39399279)
chr3 (567-687)||(43554645-43554765)
chr3 (221-491)||(24685192-24685444)
chr3 (245-440)||(24631841-24632035)
chr3 (552-672)||(755891-756012)
chr3 (490-568)||(43554291-43554371)
chr3 (348-423)||(24682519-24682594)
chr3 (295-457)||(24653501-24653664)
chr3 (539-644)||(38175790-38175894)
chr3 (755-848)||(21850465-21850574)
chr3 (755-847)||(21847375-21847483)
chr3 (766-803)||(54167186-54167223)
chr3 (766-803)||(54171766-54171803)
chr3 (561-594)||(755824-755857)
[»] chr6 (21 HSPs)
chr6 (491-731)||(8319960-8320199)
chr6 (490-731)||(8315421-8315662)
chr6 (490-731)||(27552026-27552268)
chr6 (491-731)||(17779914-17780155)
chr6 (491-686)||(17096236-17096431)
chr6 (489-728)||(27574657-27574886)
chr6 (491-680)||(17895691-17895881)
chr6 (491-686)||(14531749-14531945)
chr6 (490-680)||(17886816-17887001)
chr6 (755-815)||(27574569-27574630)
chr6 (755-847)||(17096075-17096167)
chr6 (529-644)||(6440865-6440979)
chr6 (755-822)||(8319866-8319935)
chr6 (755-802)||(8315348-8315396)
chr6 (552-593)||(17163689-17163730)
chr6 (755-814)||(17886692-17886753)
chr6 (793-848)||(8315266-8315319)
chr6 (778-847)||(27535334-27535404)
chr6 (556-594)||(7888212-7888250)
chr6 (793-847)||(8319806-8319858)
chr6 (504-593)||(17159610-17159700)
[»] chr4 (26 HSPs)
chr4 (490-731)||(31670089-31670330)
chr4 (490-686)||(53722006-53722202)
chr4 (491-686)||(10317025-10317220)
chr4 (490-686)||(8892582-8892779)
chr4 (491-686)||(27186142-27186341)
chr4 (484-686)||(43683636-43683826)
chr4 (490-644)||(44151557-44151715)
chr4 (491-644)||(3770842-3770999)
chr4 (491-644)||(44147023-44147180)
chr4 (490-686)||(50627904-50628088)
chr4 (491-644)||(41884925-41885076)
chr4 (587-686)||(35842843-35842942)
chr4 (490-644)||(31359150-31359303)
chr4 (489-644)||(49274517-49274670)
chr4 (491-586)||(31354678-31354772)
chr4 (779-847)||(44147345-44147414)
chr4 (764-822)||(44151830-44151889)
chr4 (779-847)||(44151856-44151925)
chr4 (525-685)||(53785880-53786039)
chr4 (764-803)||(3771117-3771156)
chr4 (764-803)||(44147295-44147334)
chr4 (790-836)||(31670379-31670425)
chr4 (755-810)||(31670354-31670411)
chr4 (542-594)||(45976222-45976274)
chr4 (783-849)||(53722313-53722380)
chr4 (518-568)||(35842797-35842847)
[»] chr2 (20 HSPs)
chr2 (490-731)||(8055391-8055632)
chr2 (491-731)||(8050839-8051079)
chr2 (491-731)||(6463355-6463583)
chr2 (491-686)||(12999426-12999622)
chr2 (490-644)||(36670502-36670660)
chr2 (490-644)||(36675050-36675208)
chr2 (491-653)||(13270980-13271131)
chr2 (490-644)||(35950443-35950596)
chr2 (491-644)||(41093824-41093976)
chr2 (782-848)||(8055698-8055763)
chr2 (755-830)||(12999289-12999366)
chr2 (755-815)||(6463272-6463332)
chr2 (755-822)||(8055656-8055726)
chr2 (504-591)||(29767953-29768041)
chr2 (755-803)||(8051103-8051153)
chr2 (556-644)||(34590280-34590366)
chr2 (764-803)||(36670779-36670820)
chr2 (764-803)||(36675327-36675368)
chr2 (782-847)||(8051180-8051247)
chr2 (545-582)||(27403696-27403733)
[»] scaffold0440 (4 HSPs)
scaffold0440 (490-644)||(2979-3137)
scaffold0440 (490-644)||(7505-7662)
scaffold0440 (764-815)||(7783-7833)
scaffold0440 (782-847)||(7836-7902)
[»] scaffold0044 (4 HSPs)
scaffold0044 (490-644)||(44865-45023)
scaffold0044 (491-644)||(49445-49602)
scaffold0044 (764-803)||(44708-44747)
scaffold0044 (764-803)||(49288-49327)


Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Complemental strand, 41806592 - 41806110
Alignment:
Q  8 acttatgtgacatcaatattcactagttgtttaggatcagaaattaatatagactacatctagtacttttatttcatgctcaacgatgttagttagatcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  41806592 acttatgtgacatcaatattcactagttgtttaggatcagaaattaatatagactacatctagtacttttatttcatgctcaacgatgggagttagatcc 41806493  T
Q  108 taaatgcaagaatcacaggtcgcattcgatgggagttgctttgaataccatgcaagttcacttgatcattagacaaacacaaaatgtaggtttctctctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41806492 taaatgcaagaatcacaggtcgcattcgatgggagttgctttgaataccatgcaagttcacttgatcattagacaaacacaaaatgtaggtttctctctt 41806393  T
Q  208 ctgaaccagaagagataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41806392 ctgaaccagaagagataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaata 41806293  T
Q  308 tttcacttactactgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttat 407  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41806292 tttcacttactactgtttttttctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttat 41806193  T
Q  408 ttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaatgtaagatgggcttctatatgcactgaagagaat 491  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  41806192 ttgattttataggtcccgcggaacaaga-gaatgttaactgtagaaagaatgtaagacgggcttctataagcactgaagagaat 41806110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 491 - 731
Target Start/End: Complemental strand, 30410486 - 30410246
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttata 30410287  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  30410286 tgtagaatcaataaagatcaattacaatttcatcataactt 30410246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 491 - 728
Target Start/End: Original strand, 28644562 - 28644799
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgca 28644761  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataa 728  Q
    |||||||| |||||   |||||||||||||||||||||    
T  28644762 tgtagaatcaataagaatcaattacaatttcatcataa 28644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 167; E-Value: 7e-89
Query Start/End: Original strand, 490 - 816
Target Start/End: Complemental strand, 30405961 - 30405651
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||                 ||||||||||||||||||||||||||||||||||||    
T  30405961 atgttagtttgttttaattcaagtttagtttagtgataatcacattc-----------------tgttttagtttgttatgaagtttgttacaagtttgt 30405879  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 689  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  30405878 tagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttat 30405779  T
Q  690 atgtagaattaataaaggtcaattacaatttcatcataacttnnnnnnnnnnnnnnnnnnnnnnnaattcacat-aaccttagaatcagaaactgcttct 788  Q
    ||||||||| ||||||| ||||||||||||||||||||||||                       ||||||||| |||||||||||||||||||||||||    
T  30405778 atgtagaatcaataaagatcaattacaatttcatcataactttcttctctctcaattctctctctaattcacataaaccttagaatcagaaactgcttct 30405679  T
Q  789 gaactgcttctgaactagcttctgaact 816  Q
    ||||||||||||||||||||||||||||    
T  30405678 gaactgcttctgaactagcttctgaact 30405651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  33071918 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgtt 33072017  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
     |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  33072018 ggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 42234851 - 42234656
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 38757003 - 38757186
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 38757090  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38757091 agaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 206 - 442
Target Start/End: Complemental strand, 41800270 - 41800036
Alignment:
Q  206 ttctgaaccagaaga-gataaaacaagcagcacagaaaagtcaggaaaaa-gatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttcta 303  Q
    |||||||| |||||| ||||||||||| ||||||||||| |||||||||| ||||||||| ||  || ||||| || ||||||||||||| |||||||||    
T  41800270 ttctgaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggtagaaaaacacaagccgtgaatcttcta 41800171  T
Q  304 aatatttcacttactactgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttg 403  Q
    |||||    |||||| ||||||||   |||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |    
T  41800170 aatat----cttacttctgttttttattctccaaagtgatgtgcatttccttttcctgcacagtttatggtttgtgtttgattttgttagattctcctgg 41800075  T
Q  404 ttatttgattttataggtcccgcggaacaagaggaatgt 442  Q
    ||||||||||||||||||||||  ||||||| |||||||    
T  41800074 ttatttgattttataggtcccgaagaacaaggggaatgt 41800036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 43807641 - 43807485
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  43807641 atgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 43807542  T
Q  590 tagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43807541 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 491 - 644
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  591 agaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 489 - 644
Target Start/End: Complemental strand, 202361 - 202202
Alignment:
Q  489 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 586  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  202361 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 202262  T
Q  587 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  202261 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 489 - 644
Target Start/End: Complemental strand, 317198 - 317039
Alignment:
Q  489 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 586  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  317198 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 317099  T
Q  587 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  317098 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 197842 - 197684
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  197842 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 197743  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  197742 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 312679 - 312521
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  312679 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 312580  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  312579 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 42033969 - 42034154
Alignment:
Q  19 atcaatattcactagttgtttaggatcagaaattaatatagactacatctagtacttttatttcatgctcaacgatgttagttagatcctaaatg-caag 117  Q
    |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||  |||| |||| |||||| ||||    
T  42033969 atcaatattcactagttgtttaggatcataaattattacagactacatctagtacttttatttcatgctcaatgatgggagttggatcataaatgccaag 42034068  T
Q  118 aatcacaggtcgcattcgatgggagttgctttgaataccatgcaagttcacttgatcattagacaaacacaaaatgtaggtttctct 204  Q
    |||||||||   | | | |||||||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||||    
T  42034069 aatcacaggctacgtacaatgggagttgctttgaatgccaagcaagttcacttga-cattagacaaacacaagatgtaggtttctct 42034154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 847 - 1026
Target Start/End: Complemental strand, 41806116 - 41805925
Alignment:
Q  847 agagaatacacatcctggttctcagcatcagtagaggtcctgctactgatccccagagcctctatac-agaccaagtcctttatgg-ata--gagactta 942  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||   |||||||    
T  41806116 agagaatacacgtcctggttctcagcatcagtagaggtcctgctactgatccccagagcctctatacaagagcaagtcctttatggaataagaagactta 41806017  T
Q  943 --ttatc-agttaactatcactgctagctagtttctagaaatatatgataaaatgtaa---ataaagcatcaaagac--gtaagaactggaa 1026  Q
      | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||  |||||||||||||    
T  41806016 attaatcaagttaactatcactgctagctagtttctagaaatatatgataaaatgtaaaataaaaagcatcaaagacgggtaagaactggaa 41805925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 491 - 587
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 490 - 591
Target Start/End: Original strand, 41949801 - 41949902
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| || ||||| ||| | |||||||||||||| |||||||||||||||||| ||    
T  41949801 atgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggt 41949900  T
Q  590 ta 591  Q
    ||    
T  41949901 ta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 755 - 822
Target Start/End: Complemental strand, 30410222 - 30410154
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaact-gcttctgaactagcttctgaactagcttc 822  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  30410222 aattcacataaaccttagaatcagaaactgcttctgaactagcttctgaact-gcttctgaactagcttc 30410154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 755 - 810
Target Start/End: Original strand, 28644826 - 28644882
Alignment:
Q  755 aattcacataaccttagaatcagaaactgcttctgaact-gcttctgaactagcttc 810  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  28644826 aattcacaaaaccttagaatcagaaactgcttctgaactcgcttctgaactagcttc 28644882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 784 - 847
Target Start/End: Original strand, 38757331 - 38757395
Alignment:
Q  784 cttctgaactgcttctgaacta-gcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||||||||||    |||||||||| |||||||||||||||||||||||||||||||    
T  38757331 cttctgaactgcttctgaagagtgcttctgaacaagcttccgcttctggtttttctgcgctatca 38757395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 615 - 669
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  615 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagcta 669  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 830
Target Start/End: Original strand, 28644850 - 28644890
Alignment:
Q  790 aactgcttctgaactagcttctgaactagcttccgcttctg 830  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  28644850 aactgcttctgaactcgcttctgaactagcttccgcttctg 28644890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 755 - 802
Target Start/End: Original strand, 38757253 - 38757301
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaactgcttctgaa 802  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  38757253 aattcacataaaccttagaataagaaactgcttctgaactgcttctgaa 38757301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 779 - 847
Target Start/End: Complemental strand, 30410174 - 30410105
Alignment:
Q  779 aactgcttctgaact-gcttctgaacta-gcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||||||| ||||||||||   |||||||||||||||||||||||| | |||||||||||||||    
T  30410174 aactgcttctgaactagcttctgaacagtgcttctgaactagcttccgcttct-gattttctgcgctatca 30410105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 783 - 815
Target Start/End: Complemental strand, 30405661 - 30405629
Alignment:
Q  783 gcttctgaactgcttctgaactagcttctgaac 815  Q
    |||||||||||||||||||||||||||||||||    
T  30405661 gcttctgaactgcttctgaactagcttctgaac 30405629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 783 - 815
Target Start/End: Complemental strand, 30410181 - 30410149
Alignment:
Q  783 gcttctgaactgcttctgaactagcttctgaac 815  Q
    |||||||||||||||||||||||||||||||||    
T  30410181 gcttctgaactgcttctgaactagcttctgaac 30410149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 779 - 847
Target Start/End: Complemental strand, 30405654 - 30405585
Alignment:
Q  779 aactgcttctgaact-gcttctgaacta-gcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||||||| ||||||||||   ||||||||||||||||| |||||| | |||||||||||||||    
T  30405654 aactgcttctgaactagcttctgaacagtgcttctgaactagcttctgcttct-gattttctgcgctatca 30405585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 491 - 728
Target Start/End: Original strand, 30695293 - 30695530
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgta 30695492  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataa 728  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  30695493 tgtagaatcaataaagatcaattacaatttcatcataa 30695530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 32486143 - 32485947
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| || |||||    
T  32486043 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 490 - 728
Target Start/End: Complemental strand, 40367758 - 40367531
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||            |||||||||    
T  40367758 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgt 40367671  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagatattgtatataagctacctcctttgtacatttttg 688  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||      
T  40367670 tagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttca 40367571  T
Q  689 tatgtagaattaataaaggtcaattacaatttcatcataa 728  Q
    |||||||||| |||||   |||||||||||||||||||||    
T  40367570 tatgtagaatcaataagaatcaattacaatttcatcataa 40367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaatt-acattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttg 19502406  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19502407 ttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 490 - 686
Target Start/End: Complemental strand, 26336965 - 26336767
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||  || ||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  26336965 atgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgttt 26336866  T
Q  588 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26336865 gttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 491 - 847
Target Start/End: Complemental strand, 40371892 - 40371549
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    ||||| |||||||||||||||||||||| |||||||| |||||              | |||||||||||||||||||||||||||||||||||||  ||    
T  40371792 agaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcata 40371707  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataacttnnnnnnnnnnnnnnnnnnnnnnnaattcacataaccttagaatcagaaactgcttct-g 789  Q
    |||||||| |||||   |||| |||||||||||||||| ||                       |||||||| |||||||||||||||||||||||||      
T  40371706 tgtagaatcaataagaatcaactacaatttcatcataattttcttctctctcaattctctctctaattcacaaaaccttagaatcagaaactgcttctaa 40371607  T
Q  790 aactgcttctgaac-tagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||| |||  ||||||||||| ||||||||||||||| |||||||||||||||    
T  40371606 aactgcttctaaacagagcttctgaacaagcttccgcttctgg-ttttctgcgctatca 40371549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 36632314 - 36632497
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| ||||||||||||            |||||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgtt 36632401  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36632402 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 511 - 676
Target Start/End: Original strand, 43384972 - 43385138
Alignment:
Q  511 agtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc 610  Q
    ||||||||||||||||||||| ||| | |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  611 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 676  Q
    ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 7099532 - 7099374
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7099532 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7099433  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7099432 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 12023288 - 12023446
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  12023288 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 12023387  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023388 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 491 - 644
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 16798668 - 16798826
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  16798668 atgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 16798767  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16798768 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 16794108 - 16794265
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 539 - 672
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  539 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 638  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  639 agcaacttagctagatattgtatataagctacct 672  Q
    ||||||||| ||||| ||||||||||||||||||    
T  20830337 agcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 10274546 - 10274698
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||| ||||   ||||| | ||| ||||||||  | |||||| |||||||||||    
T  10274646 agagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 485 - 599
Target Start/End: Original strand, 10277198 - 10277312
Alignment:
Q  485 agagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaag 584  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| |||||||||||    
T  10277198 agaggatgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaag 10277297  T
Q  585 tttgttagaggttag 599  Q
    || ||||||| ||||    
T  10277298 ttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 755 - 847
Target Start/End: Original strand, 30695558 - 30695651
Alignment:
Q  755 aattcacataaccttagaatcagaaactgcttctgaa-ctgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30695558 aattcacaaaaccttagaataagaaactacttctgaaactgcttctgaactagcttctgaacaagcttccgcttctggtttttctgcgctatca 30695651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 37682035 - 37682182
Alignment:
Q  490 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattac-attttgttttagtttgttatgaagtttgttacaagttt 587  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || | |||||||||||||||||||           ||||||    
T  37682035 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatg-----------aagttt 37682123  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  37682124 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37682182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 344 - 491
Target Start/End: Original strand, 278541 - 278689
Alignment:
Q  344 atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgt 442  Q
    ||||||||||||||||  ||  ||||||||||||  ||| |||||| ||| ||||||||||| ||||||| |||||||||||   |||||||||||||||    
T  278541 atgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgt 278640  T
Q  443 taactgtagaaagaatgtaagatgggcttctatatgcactgaagagaat 491  Q
    ||| ||||| ||||   | || || ||||||||| ||||||||||||||    
T  278641 taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaat 278689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 37658732 - 37658878
Alignment:
Q  491 tgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattac-attttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| || | |||||||||| ||||||||           |||||||    
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatg-----------aagtttg 37658820  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  37658821 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 37658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 613
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  539 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctag 613  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Complemental strand, 7099256 - 7099217
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7099256 aaccttagaatcagaaactgcttctgaactgcttctgaac 7099217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Complemental strand, 7103825 - 7103786
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7103825 aaccttagaatcagaaactgcttctgaactgcttctgaac 7103786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 12019008 - 12019047
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12019008 aaccttagaatcagaaactgcttctgaactgcttctgaac 12019047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 16798945 - 16798984
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16798945 aaccttagaatcagaaactgcttctgaactgcttctgaac 16798984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 764 - 801
Target Start/End: Original strand, 16794384 - 16794421
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctga 801  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16794384 aaccttagaatcagaaactgcttctgaactgcttctga 16794421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 12023577 - 12023616
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12023577 aaccttagaatcagaaactgcttctgaactgcttttgaac 12023616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 764 - 847
Target Start/End: Original strand, 37658995 - 37659082
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaac--tgcttctgaacta--gcttctgaac-tagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||||||||||||||||||||  ||||||||||| |  ||||||||||  |||||| |||||| | |||||||||||||||    
T  37658995 aaccttagaatcagaaactgcttctgaacagtgcttctgaacaactgcttctgaacaaagcttctgcttct-gattttctgcgctatca 37659082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 278393 - 278511
Alignment:
Q  206 ttctgaaccagaagag-ataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaag--ccgtaaatcttct 302  Q
    |||||||||||||||| ||||||| |  ||||||||||| ||||||||||||| ||||| ||  ||||||| | ||||||| |||  || | ||||||||    
T  278393 ttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaagatctaggagctcaaatgagg-taacaaacagaaggcccatgaatcttct 278491  T
Q  303 aaatatttcacttactactg 322  Q
    |||| | || ||||||||||    
T  278492 aaatgtctcccttactactg 278511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 911
Target Start/End: Original strand, 278834 - 278869
Alignment:
Q  876 agtagaggtcctgctactgatccccagagcctctat 911  Q
    ||||||||||||||||||||||| ||||||||||||    
T  278834 agtagaggtcctgctactgatccacagagcctctat 278869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 37682299 - 37682340
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaac--tgcttctgaac 803  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  37682299 aaccttagaatcagaaactgcttctgaacagtgcttctgaac 37682340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 805 - 847
Target Start/End: Complemental strand, 40367427 - 40367386
Alignment:
Q  805 agcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  40367427 agcttctgaacaagcttccgcttctgg-ttttctgcgctatca 40367386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 755 - 822
Target Start/End: Complemental strand, 40367504 - 40367435
Alignment:
Q  755 aattcacataaccttagaatcagaaactgcttct-gaactgcttctgaac-tagcttctgaactagcttc 822  Q
    |||||||| ||||||||||||||||||| |||||  ||||| ||||||||  ||||||||||| ||||||    
T  40367504 aattcacaaaaccttagaatcagaaactacttctaaaactgattctgaacagagcttctgaacaagcttc 40367435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 490 - 731
Target Start/End: Original strand, 27761396 - 27761638
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  27761396 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 27761495  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 689  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27761496 tagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttat 27761595  T
Q  690 atgtagaattaataaaggtcaattacaa-tttcatcataactt 731  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||    
T  27761596 atgtagaatcaataaagatcatttacaattttcatcataactt 27761638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 491 - 731
Target Start/End: Original strand, 27756846 - 27757087
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  27756846 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgtt 27756945  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27756946 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttata 27757045  T
Q  691 tgtagaattaataaaggtcaattacaa-tttcatcataactt 731  Q
    |||||||| ||||||| ||| |||||| ||||||||||||||    
T  27757046 tgtagaatcaataaagatcatttacaattttcatcataactt 27757087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 497 - 728
Target Start/End: Complemental strand, 47419729 - 47419498
Alignment:
Q  497 tttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggt 596  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  597 tagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtaga 696  Q
    ||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtaga 47419530  T
Q  697 attaataaaggtcaattacaatttcatcataa 728  Q
    || ||||||  |||||||||||||||||||||    
T  47419529 atcaataaaaatcaattacaatttcatcataa 47419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 491 - 731
Target Start/End: Original strand, 22901154 - 22901396
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 688  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 22901352  T
Q  689 tatgtagaattaataaaggtca-attacaatttcatcataactt 731  Q
    |||||||||| ||||||| |||  |||||| |||||||||||||    
T  22901353 tatgtagaatcaataaagatcattttacaaattcatcataactt 22901396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 490 - 672
Target Start/End: Original strand, 35705633 - 35705815
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgtt-atgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  35705633 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttg 35705732  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacct 672  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  35705733 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacct 35705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 7466669 - 7466485
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||            |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgt 7466582  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7466581 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 504 - 680
Target Start/End: Complemental strand, 733811 - 733634
Alignment:
Q  504 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtag 602  Q
    |||||||||||||| |||||||||||||   | || |||||||| |||| ||   ||||||||||||||| |||||||||| ||||||||||||||| |     
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  603 ataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 680  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgta 733634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 7940241 - 7940083
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7940241 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7940142  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7940141 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 491 - 644
Target Start/End: Complemental strand, 7944793 - 7944636
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 782 - 847
Target Start/End: Original strand, 27757188 - 27757252
Alignment:
Q  782 tgcttctgaactgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  27757188 tgcttctgaactgcttctgaactagcttctgaacaagcttccgcttct-gattttctgcgctatca 27757252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 503 - 663
Target Start/End: Complemental strand, 13828248 - 13828087
Alignment:
Q  503 ttaattcaagtttagtttagtgataatcacaatcaat-ggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagta 601  Q
    ||||||||||||||  |||||||||||||   | | | ||||||| |||||||  ||| ||||||| ||||||||||||||||||||||||||  ||       
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  602 gataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat 663  Q
     |||| |  ||| || |||||||||||||||||||||||| || || ||||||| |||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Complemental strand, 7939965 - 7939926
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7939965 aaccttagaatcagaaactgcttctgaactgcttctgaac 7939926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Complemental strand, 7944518 - 7944479
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7944518 aaccttagaatcagaaactgcttctgaactgcttctgaac 7944479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 755 - 803
Target Start/End: Original strand, 22901420 - 22901470
Alignment:
Q  755 aattcacataa--ccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  22901420 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaac 22901470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 755 - 803
Target Start/End: Original strand, 27757111 - 27757161
Alignment:
Q  755 aattcacataa--ccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  27757111 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaac 27757161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 755 - 847
Target Start/End: Complemental strand, 47419470 - 47419376
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaac-tgcttctgaac-tagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||  ||||  ||||||||||| ||||||||||||| | |||||||||||||||    
T  47419470 aattcacataaaccttagaatcagaaactgcttctgaacgagctttcgaacagagcttctgaacaagcttccgcttct-gattttctgcgctatca 47419376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 779 - 847
Target Start/End: Original strand, 22901505 - 22901573
Alignment:
Q  779 aactgcttctgaact-gcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||| |||| |||||| ||||||||||||||| ||||||||||||| | |||||||||||||||    
T  22901505 aactgcttcttaactagcttctaaactagcttctgaacaagcttccgcttct-gattttctgcgctatca 22901573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 755 - 803
Target Start/End: Original strand, 27761662 - 27761712
Alignment:
Q  755 aattcacataa--ccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  27761662 aattcacataaaaccttagaattagaaactgcttctgaactgcttctgaac 27761712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 779 - 847
Target Start/End: Original strand, 27761699 - 27761767
Alignment:
Q  779 aactgcttctgaac--tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||||||  |||||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  27761699 aactgcttctgaacagtgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 27761767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 503 - 599
Target Start/End: Original strand, 37355573 - 37355669
Alignment:
Q  503 ttaattcaagtttagtttagtgataatcacaatcaatggttaattacatt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 599  Q
    ||||||||||||||  | ||||||||||||| | | |||||||| | ||| ||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattag 37355669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 822
Target Start/End: Original strand, 22901497 - 22901537
Alignment:
Q  782 tgcttctgaactgcttctgaactagcttctgaactagcttc 822  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  22901497 tgcttctgaactgcttcttaactagcttctaaactagcttc 22901537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 782 - 848
Target Start/End: Complemental strand, 7939875 - 7939807
Alignment:
Q  782 tgcttctgaactgcttctgaacta--gcttctgaac-tagcttccgcttctggtttttctgcgctatcag 848  Q
    |||||||||||||||||||||| |  ||||||||||  ||||||||||||| | ||||||||||||||||    
T  7939875 tgcttctgaactgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgctatcag 7939807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 782 - 847
Target Start/End: Complemental strand, 7944452 - 7944385
Alignment:
Q  782 tgcttctgaactgcttctgaacta--gcttctgaac-tagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||||||||||||| |  ||||||||||  ||||||||||||| | |||||||||||||||    
T  7944452 tgcttctgaactgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgctatca 7944385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 491 - 731
Target Start/End: Original strand, 39793831 - 39794070
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  39793831 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgtt 39793930  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39793931 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcata 39794029  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  39794030 tgtagaatcaataaagatcaattacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 491 - 731
Target Start/End: Complemental strand, 16588635 - 16588395
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    ||||||||  | ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  16588535 agaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgta 16588436  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    || ||||| |||||   ||||||||||||||||||||||||    
T  16588435 tggagaatcaataagaatcaattacaatttcatcataactt 16588395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 491 - 847
Target Start/End: Original strand, 26311522 - 26311868
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26311609  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||    
T  26311610 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgta 26311708  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataacttnnnnnnnnnnnnnnnnnnnnnnnaattcacat-aaccttagaatcagaaactgcttctg 789  Q
    || ||||| ||||||| ||||||||||||||||||||||||                       ||||||||| ||||||||||||| || |||||||||    
T  26311709 tgcagaatcaataaagatcaattacaatttcatcataactttcttctctctcaattctctctctaattcacataaaccttagaatcaaaatctgcttctg 26311808  T
Q  790 aact-gcttctgaac-tagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||| ||||||||||   |||||||||| |||||||||||||||||||||||||| ||||    
T  26311809 aactagcttctgaacagtgcttctgaacaagcttccgcttctggtttttctgcgcaatca 26311868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 490 - 731
Target Start/End: Original strand, 26316012 - 26316240
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||    
T  26316012 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgt 26316099  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||    
T  26316100 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgt 26316198  T
Q  690 atgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    ||| ||||| ||||||| ||||||||||||||||||||||||    
T  26316199 atgcagaatcaataaagatcaattacaatttcatcataactt 26316240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 490 - 686
Target Start/End: Complemental strand, 43591979 - 43591783
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||  || ||| ||||||||||||||||||||||||||||  ||||    
T  43591979 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgt 43591880  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43591879 tagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 10504435 - 10504588
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  10504435 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagt 10504534  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  10504535 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 755 - 849
Target Start/End: Complemental strand, 16588370 - 16588275
Alignment:
Q  755 aattcacataaccttagaatcagaaactgcttctgaac--tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatcaga 849  Q
    |||||||| |||||||||||||||||||||||||| ||   |||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||||||    
T  16588370 aattcacaaaaccttagaatcagaaactgcttctgtacagagcttctgaacaagcttatgaacaagcttccgcttctgg-ttttctgtgctatcaga 16588275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 755 - 847
Target Start/End: Original strand, 26316253 - 26316348
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaactg-cttctgaacta-gcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||| ||||||||| | ||||||||||||||||  |||||||||   |||||| ||| |||||||| ||||||||||||||||||||||    
T  26316253 aattcacataaaccttagaattaaaaactgcttctgaactaacttctgaacagtgcttctaaacaagcttccgtttctggtttttctgcgctatca 26316348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 755 - 802
Target Start/End: Original strand, 39794097 - 39794145
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaactgcttctgaa 802  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  39794097 aattcacataaaccttagaataagaaactacttctgaactgcttctgaa 39794145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 793 - 847
Target Start/End: Original strand, 39794198 - 39794250
Alignment:
Q  793 tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  39794198 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 39794250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 793 - 847
Target Start/End: Original strand, 39796802 - 39796854
Alignment:
Q  793 tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  39796802 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 39796854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 490 - 731
Target Start/End: Original strand, 21847108 - 21847351
Alignment:
Q  490 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21847108 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  588 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 687  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T
Q  688 gtatgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||    
T  21847308 gtatatagaatcaataaagatcatttacaatttcatcataactt 21847351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 490 - 731
Target Start/End: Original strand, 21850198 - 21850441
Alignment:
Q  490 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21850198 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  588 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 687  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T
Q  688 gtatgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||    
T  21850398 gtatatagaatcaataaagatcatttacaatttcatcataactt 21850441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 9105275 - 9105470
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 11004560 - 11004365
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 490 - 686
Target Start/End: Original strand, 43547722 - 43547920
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 587  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43547722 atgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagttt 43547821  T
Q  588 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  43547822 gttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 9697586 - 9697783
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 54172082 - 54171924
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54172082 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54171983  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  54171982 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 54167502 - 54167344
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54167502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54167403  T
Q  588 gttagaggttagtagataa--gatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||  | ||||  |   ||||||||||||||||||||||||||||||||||    
T  54167402 gttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 491 - 644
Target Start/End: Complemental strand, 39399279 - 39399127
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  39399279 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 39399180  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39399179 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 567 - 687
Target Start/End: Original strand, 43554645 - 43554765
Alignment:
Q  567 tatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataag 666  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||| || ||||||||||||||  ||| ||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  667 ctacctcctttgtacattttt 687  Q
    ||||||| |||||| ||||||    
T  43554745 ctacctcttttgtatattttt 43554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 221 - 491
Target Start/End: Complemental strand, 24685444 - 24685192
Alignment:
Q  221 gataaaacaagcagcacagaaaagtcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactac 320  Q
    |||||||| || |||| ||| || ||||||||||||  ||||| || || |||||| |||||||| ||||||  |||||||||||| || ||||||| ||    
T  24685444 gataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaaaagccgcgaatcttctaaatgttgcacttaccac 24685345  T
Q  321 tgtttttctctctccaaagttagatgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttatagg 420  Q
    ||||||||||||||                   |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  24685344 tgtttttctctctct------------------ttttcctgcacagtttatggtttgtgtttgattttgtgagattcttctggttatttgattttatagg 24685263  T
Q  421 tcccgcggaacaagaggaatgttaactgtagaaagaatgtaagatgggcttctatatgcactgaagagaat 491  Q
    ||||   |||||||||||||||||| || |  |||||| | ||||| | || |||| |||| |||||||||    
T  24685262 tccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaat 24685192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 245 - 440
Target Start/End: Complemental strand, 24632035 - 24631841
Alignment:
Q  245 tcaggaaaaagatgtaggaacttgaatgaggttgacaaacacaagccgtaaatcttctaaatatttcacttactactgtttttctctctccaaagttaga 344  Q
    |||||||||||||  |||| |||||||||||| |||| | |||||||  |||||||||||||||||||||||||| ||||| | ||||| | |||| | |    
T  24632035 tcaggaaaaagatccaggagcttgaatgaggtagacagatacaagccacaaatcttctaaatatttcacttactaatgtttct-tctcttccaagtgata 24631937  T
Q  345 tgcatttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaat 440  Q
    || ||||| ||||||  || | |||||||| ||| || |||||||||||||| |||  |||||||||||||||  |||||   |||||||||||||    
T  24631936 tggatttctttttccaacacaatttatggtctgttttcgattttgtgagattatcccggttatttgattttattagtcccaaagaacaagaggaat 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 552 - 672
Target Start/End: Original strand, 755891 - 756012
Alignment:
Q  552 tttgttttagtttgttatgaagtttgttacaagtttgttagag-gttagtagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttagc 649  Q
    |||||||||||||||| |||||||||||||||||||||||||| || | || |||| |   ||| ||||||||||||||||||||||||||| || || |    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaacta-ataaaaggttagggtttgttacattgcttgtgcttcaagctacctaac 755989  T
Q  650 tagatattgtatataagctacct 672  Q
    |||||  ||||||||||||||||    
T  755990 tagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 490 - 568
Target Start/End: Original strand, 43554291 - 43554371
Alignment:
Q  490 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattacattttg-ttttagtttgtta 568  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| | |||||||| |||||||||||||    
T  43554291 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 24682594 - 24682519
Alignment:
Q  348 atttccttttcctgcaaagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcc 423  Q
    |||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24682594 atttacttttcctgcacagtttattgtttgcgtttgattttatgagattctcctggttctttgattttataggtcc 24682519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 295 - 457
Target Start/End: Complemental strand, 24653664 - 24653501
Alignment:
Q  295 aatcttctaaatatttcacttactactgtttttctctctccaaagttagatgcatttcctttt--cctgcaaagtttatggtttgtgtttgattttgtg- 391  Q
    |||||||||||||||||||||||||||||||  || | |||| | | | |||||||| |||||  |||||| ||||||| || ||||||||||||| ||     
T  24653664 aatcttctaaatatttcacttactactgttt--ctttttccata-tgatatgcatttacttttttcctgcacagtttattgtgtgtgtttgattttatgc 24653568  T
Q  392 -agattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaa 457  Q
     |||||||||| ||| |||||||||||||||||    |||  ||||||||||||| ||||| |||||    
T  24653567 gagattctcctggttctttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaa 24653501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 539 - 644
Target Start/End: Complemental strand, 38175894 - 38175790
Alignment:
Q  539 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 638  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||   ||||||| ||| ||||||||| | |||||| |||||    
T  38175894 tggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttca 38175796  T
Q  639 agcaac 644  Q
    ||||||    
T  38175795 agcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 755 - 848
Target Start/End: Original strand, 21850465 - 21850574
Alignment:
Q  755 aattcacataa--ccttagaatcagaaactgcttctgaactgcttctgaac--------------tagcttctgaactagcttccgcttctggtttttct 838  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||               ||||||||||| ||||||||||||||||||||||    
T  21850465 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaacagagcttctgaacaagcttccgcttctggtttttct 21850564  T
Q  839 gcgctatcag 848  Q
    ||||||||||    
T  21850565 gcgctatcag 21850574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 755 - 847
Target Start/End: Original strand, 21847375 - 21847483
Alignment:
Q  755 aattcacataa--ccttagaatcagaaactgcttctgaactgcttctgaac--------------tagcttctgaactagcttccgcttctggtttttct 838  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||               ||||||||||| ||||||||||||||||||||||    
T  21847375 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaacagagcttctgaacaagcttccgcttctggtttttct 21847474  T
Q  839 gcgctatca 847  Q
    |||||||||    
T  21847475 gcgctatca 21847483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 766 - 803
Target Start/End: Complemental strand, 54167223 - 54167186
Alignment:
Q  766 ccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54167223 ccttagaatcagaaactgcttctgaactgcttctgaac 54167186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 766 - 803
Target Start/End: Complemental strand, 54171803 - 54171766
Alignment:
Q  766 ccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54171803 ccttagaatcagaaactgcttctgaactgcttctgaac 54171766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 561 - 594
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  561 gtttgttatgaagtttgttacaagtttgttagag 594  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 491 - 731
Target Start/End: Complemental strand, 8320199 - 8319960
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  8320199 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgtt 8320100  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  8320099 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct-ta 8320001  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||||||| ||||||| |||||| || ||||||||||||||    
T  8320000 tgtagaatcaataaagatcaatttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 490 - 731
Target Start/End: Complemental strand, 8315662 - 8315421
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  8315662 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttca 8315464  T
Q  689 tatgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||||||||| ||||||| |||||| || ||||||||||||||    
T  8315463 tatgtagaatcaataaagatcaatttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 490 - 731
Target Start/End: Complemental strand, 27552268 - 27552026
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  27552268 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgt 27552169  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-g 688  Q
    || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27552168 taaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcg 27552069  T
Q  689 tatgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||| ||||| |||||   ||||||||||||||||||||||||    
T  27552068 tatggagaatcaataagaatcaattacaatttcatcataactt 27552026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 491 - 731
Target Start/End: Original strand, 17779914 - 17780155
Alignment:
Q  491 tgttagtttgtttt-aattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 689  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  17780014 tagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgt 17780113  T
Q  690 atgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    ||||||||| |||||   ||||||||||||||||||||||||    
T  17780114 atgtagaatcaataagaatcaattacaatttcatcataactt 17780155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 17096431 - 17096236
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 489 - 728
Target Start/End: Complemental strand, 27574886 - 27574657
Alignment:
Q  489 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||            
T  27574886 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta-------- 27574795  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt- 687  Q
       |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  27574794 ---gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttc 27574698  T
Q  688 gtatgtagaattaataaaggtcaattacaatttcatcataa 728  Q
    ||||| | ||| |||||   ||||||||||||||| |||||    
T  27574697 gtatggaaaatcaataagaatcaattacaatttcaccataa 27574657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 491 - 680
Target Start/End: Complemental strand, 17895881 - 17895691
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgt 17895782  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 680  Q
    |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17895781 tagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgta 17895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 14531945 - 14531749
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  14531845 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 490 - 680
Target Start/End: Complemental strand, 17887001 - 17886816
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| ||||       |||||||    
T  17887001 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttg 17886908  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 680  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17886907 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgta 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 755 - 815
Target Start/End: Complemental strand, 27574630 - 27574569
Alignment:
Q  755 aattcacataaccttagaatcagaaactgcttct-gaactgcttctgaactagcttctgaac 815  Q
    |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  27574630 aattcacaaaaccttagaatcagaaactgcttctcaaactgcttctgaactagcttctgaac 27574569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 755 - 847
Target Start/End: Complemental strand, 17096167 - 17096075
Alignment:
Q  755 aattcacataaccttagaatcagaaactgcttctgaactgcttctgaa-ctagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    |||| ||||| |||||| |||||| | |||||||||||||||    
T  17096167 aattcacaaaaccttagaataagaaactgcttctgaactgcttctgaagagtgcttatgaacaagcttctgcttct-gattttctgcgctatca 17096075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 529 - 644
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  529 tcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgc 628  Q
    ||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  629 ttgtgcttcaagcaac 644  Q
    |||| |||||||||||    
T  6440880 ttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 755 - 822
Target Start/End: Complemental strand, 8319935 - 8319866
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaactgcttctgaa-ctagcttctgaactagcttc 822  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    |||||||||||||||||    
T  8319935 aattcacataaaccttagaataagaaactgcttctgaactgcttctgaagagtgcttctgaactagcttc 8319866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 755 - 802
Target Start/End: Complemental strand, 8315396 - 8315348
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaactgcttctgaa 802  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  8315396 aattcacataaaccttagaataagaaactgcttctgaactgcttctgaa 8315348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 552 - 593
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  552 tttgttttagtttgttatgaagtttgttacaagtttgttaga 593  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 755 - 814
Target Start/End: Complemental strand, 17886753 - 17886692
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaact-gcttctgaactagcttctgaa 814  Q
    ||||||||||| || ||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  17886753 aattcacataaaccctagaatcagtaactgcttctgaactagcttctgaacttgcttctgaa 17886692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 793 - 848
Target Start/End: Complemental strand, 8315319 - 8315266
Alignment:
Q  793 tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatcag 848  Q
    |||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||    
T  8315319 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatcag 8315266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 778 - 847
Target Start/End: Complemental strand, 27535404 - 27535334
Alignment:
Q  778 aaactgcttctgaact-gcttctgaact-agcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||| ||| |||||| ||||||||||  ||||||||||| ||||||||||||||| |||||||||||||||    
T  27535404 aaactacttatgaactagcttctgaacagagcttctgaacaagcttccgcttctgg-ttttctgcgctatca 27535334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 556 - 594
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  556 ttttagtttgttatgaagtttgttacaagtttgttagag 594  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 793 - 847
Target Start/End: Complemental strand, 8319858 - 8319806
Alignment:
Q  793 tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  8319858 tgcttctgaact-gcttctgaacaagcttccgcttct-gattttctgcgctatca 8319806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 504 - 593
Target Start/End: Original strand, 17159610 - 17159700
Alignment:
Q  504 taattcaagtttagtttagtgataatcacaatcaatgg-ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttaga 593  Q
    |||||||||||||| |||||||||||||  || | | | || || | | |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 2e-98; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 490 - 731
Target Start/End: Original strand, 31670089 - 31670330
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31670089 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 688  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 31670287  T
Q  689 tatgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
     ||||||||| ||||||| ||| ||||||||||||||||||||    
T  31670288 aatgtagaatcaataaagatcatttacaatttcatcataactt 31670330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 490 - 686
Target Start/End: Original strand, 53722006 - 53722202
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53722006 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 53722105  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53722106 tagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 10317220 - 10317025
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 490 - 686
Target Start/End: Complemental strand, 8892779 - 8892582
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  8892779 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||| |||| | ||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 491 - 686
Target Start/End: Original strand, 27186142 - 27186341
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt--agttt-gttatgaagtttgttacaagtt 586  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||  ||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  587 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 484 - 686
Target Start/End: Complemental strand, 43683826 - 43683636
Alignment:
Q  484 aagagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaa 583  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||       
T  43683826 aagacaatgttagtt-gttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta--- 43683731  T
Q  584 gtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacat 683  Q
            |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  43683730 --------gaggttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatat 43683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 44151557 - 44151715
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  44151557 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44151656  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44151657 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 3770842 - 3770999
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 44147023 - 44147180
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 490 - 686
Target Start/End: Complemental strand, 50628088 - 50627904
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||| || |||| |||||||||||||            ||||||||    
T  50628088 atgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttg 50628002  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  50628001 ttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 41884925 - 41885076
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 41885023  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||| ||||   ||||||| ||| ||||||||| | |||||| |||||||||||    
T  41885024 agagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 587 - 686
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  587 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 31359150 - 31359303
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||| | || |||||| |||||| ||||||||||||| ||    
T  31359150 atgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagt 31359249  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  31359250 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 489 - 644
Target Start/End: Complemental strand, 49274670 - 49274517
Alignment:
Q  489 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |    
T  49274670 aatgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttag 49274572  T
Q  589 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  49274571 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 31354678 - 31354772
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtt 586  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| | |||||||| |||||| | || || |||||||||| |||||||||||||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 779 - 847
Target Start/End: Original strand, 44147345 - 44147414
Alignment:
Q  779 aactgcttctgaac--tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  44147345 aactgcttctgaacagtgcttctgaactagcttctgaacaagcttccgcttct-gattttctgcgctatca 44147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 764 - 822
Target Start/End: Original strand, 44151830 - 44151889
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac-tagcttctgaactagcttc 822  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  44151830 aaccttagaatcagaaactgcttctgaactgcttctgaacagtgcttctgaactagcttc 44151889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 779 - 847
Target Start/End: Original strand, 44151856 - 44151925
Alignment:
Q  779 aactgcttctgaac--tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  44151856 aactgcttctgaacagtgcttctgaactagcttctgaacaagcttccgcttct-gattttctgcgctatca 44151925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 525 - 685
Target Start/End: Original strand, 53785880 - 53786039
Alignment:
Q  525 ataatcacaatcaatggttaattacattt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgtta 622  Q
    ||||||||| ||| |||||||| ||||||  |||||| |||||||| ||| ||||||||||||||||||||   |||   |||   | ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgtta 53785977  T
Q  623 cattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 685  Q
    ||| |||||||||||||||||| || |||| | | ||||||||||||||| ||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacct-ctttgtacattt 53786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 3771117 - 3771156
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3771117 aaccttagaatcagaaactgcttctgaactgcttctgaac 3771156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 44147295 - 44147334
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44147295 aaccttagaatcagaaactgcttctgaactgcttctgaac 44147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 790 - 836
Target Start/End: Original strand, 31670379 - 31670425
Alignment:
Q  790 aactgcttctgaactagcttctgaactagcttccgcttctggttttt 836  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||    
T  31670379 aactgcttctgaactaacttctgaactagcttccgcttctgattttt 31670425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 755 - 810
Target Start/End: Original strand, 31670354 - 31670411
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaact-gcttctgaactagcttc 810  Q
    ||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  31670354 aattcacataaaccttagaatcagaaactgcttctgaactaacttctgaactagcttc 31670411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 594
Target Start/End: Complemental strand, 45976274 - 45976222
Alignment:
Q  542 ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagag 594  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976274 ttaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 783 - 849
Target Start/End: Original strand, 53722313 - 53722380
Alignment:
Q  783 gcttctgaac--tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatcaga 849  Q
    ||||||||||  |||||| ||||  |||||||||| ||||||||||||||| |||||||||||||||||    
T  53722313 gcttctgaacagtgcttcagaacctgcttctgaacaagcttccgcttctgg-ttttctgcgctatcaga 53722380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 518 - 568
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  518 tttagtgataatcacaatcaatggttaattacattttgttttagtttgtta 568  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 2e-98; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 490 - 731
Target Start/End: Original strand, 8055391 - 8055632
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||    
T  8055391 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgt 8055490  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  8055491 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcat 8055589  T
Q  690 atgtagaattaataaaggtcaattacaa-tttcatcataactt 731  Q
    ||||||||| ||||||| ||  |||||| ||||||||||||||    
T  8055590 atgtagaatcaataaagatcttttacaattttcatcataactt 8055632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 491 - 731
Target Start/End: Original strand, 8050839 - 8051079
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  8050839 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgtt 8050938  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||    
T  8050939 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtaca-tttcata 8051037  T
Q  691 tgtagaattaataaaggtcaattacaa-tttcatcataactt 731  Q
    |||||||| ||||||| ||  |||||| ||||||||||||||    
T  8051038 tgtagaatcaataaagatcttttacaattttcatcataactt 8051079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 491 - 731
Target Start/End: Complemental strand, 6463583 - 6463355
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||            ||||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgtt 6463496  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 690  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6463495 agaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagta 6463396  T
Q  691 tgtagaattaataaaggtcaattacaatttcatcataactt 731  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  6463395 tgtagaatcaataaagatcaattacaatttcatcataactt 6463355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 491 - 686
Target Start/End: Complemental strand, 12999622 - 12999426
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 686  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12999522 tagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 36670502 - 36670660
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36670502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36670601  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36670602 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 36675050 - 36675208
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36675050 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36675149  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36675150 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 491 - 653
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||||            ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgt 13271044  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 653  Q
    |||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271043 tagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 35950596 - 35950443
Alignment:
Q  490 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 589  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  35950596 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagt 35950497  T
Q  590 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||| ||||    |||| | ||| ||||||||| | |||||| |||||||||||    
T  35950496 tagagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 491 - 644
Target Start/End: Original strand, 41093824 - 41093976
Alignment:
Q  491 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 590  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| | || ||||| | |||| | || ||||||||||||| |||||||||| || |||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  591 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093924 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

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Target: chr2; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 782 - 848
Target Start/End: Original strand, 8055698 - 8055763
Alignment:
Q  782 tgcttctgaactgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatcag 848  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  8055698 tgcttctgaactgcttctgaactagcttctgaacaagcttccgcttct-gattttctgcgctatcag 8055763  T

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Target: chr2; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 755 - 830
Target Start/End: Complemental strand, 12999366 - 12999289
Alignment:
Q  755 aattcacataa-ccttagaatcagaaactgcttctgaact-gcttctgaactagcttctgaactagcttccgcttctg 830  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  12999366 aattcacataaaccttaggatcagaaactgcttctgaactagcttctgaattagcttctggactagcttccgcttctg 12999289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 755 - 815
Target Start/End: Complemental strand, 6463332 - 6463272
Alignment:
Q  755 aattcacataaccttagaatcagaaactgcttctgaactgcttctgaactagcttctgaac 815  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||||    
T  6463332 aattcacaaaaccttagaataagaaactgcttctgaactgcttctgaactaatttctgaac 6463272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 755 - 822
Target Start/End: Original strand, 8055656 - 8055726
Alignment:
Q  755 aattcacataa--ccttagaatcagaaactgcttctgaac--tgcttctgaactagcttctgaactagcttc 822  Q
    |||||||||||  |||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  8055656 aattcacataaaaccttagaatcagaaactgcttctgaacagtgcttctgaact-gcttctgaactagcttc 8055726  T

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Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 504 - 591
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  504 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtta 591  Q
    ||||||||||||||||||||||||||||  || || || || || ||| |||||||||||||||| | |||||||||||||||| ||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 755 - 803
Target Start/End: Original strand, 8051103 - 8051153
Alignment:
Q  755 aattcacataa--ccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  8051103 aattcacataaaaccttagaatcagaaactgcttctgaactgcttctgaac 8051153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 644
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  556 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 36670779 - 36670820
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaac--tgcttctgaac 803  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  36670779 aaccttagaatcagaaactgcttctgaacagtgcttctgaac 36670820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 764 - 803
Target Start/End: Original strand, 36675327 - 36675368
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaac--tgcttctgaac 803  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  36675327 aaccttagaatcagaaactgcttctgaacagtgcttctgaac 36675368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 782 - 847
Target Start/End: Original strand, 8051180 - 8051247
Alignment:
Q  782 tgcttctgaactgcttctgaacta--gcttctgaac-tagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||||||||||||| |  ||||||||||  ||||||||||||| | |||||||||||||||    
T  8051180 tgcttctgaactgcttctgaacaactgcttctgaacaaagcttccgcttct-gattttctgcgctatca 8051247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 545 - 582
Target Start/End: Complemental strand, 27403733 - 27403696
Alignment:
Q  545 attacattttgttttagtttgttatgaagtttgttaca 582  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27403733 attacactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 104; Significance: 3e-51; HSPs: 4)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 2979 - 3137
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  2979 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 3078  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3079 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 490 - 644
Target Start/End: Original strand, 7505 - 7662
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  7505 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||| ||||||||||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 764 - 815
Target Start/End: Original strand, 7783 - 7833
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaactagcttctgaac 815  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7783 aaccttagaatcagaaactgcttctgaactgcttctgaact-gcttctgaac 7833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 847
Target Start/End: Original strand, 7836 - 7902
Alignment:
Q  782 tgcttctgaac--tgcttctgaactagcttctgaactagcttccgcttctggtttttctgcgctatca 847  Q
    |||||||||||  |||||||||||| |||||||||| |||||||||||||   |||||||||||||||    
T  7836 tgcttctgaacagtgcttctgaacttgcttctgaacaagcttccgcttct-aattttctgcgctatca 7902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 104; Significance: 3e-51; HSPs: 4)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 490 - 644
Target Start/End: Complemental strand, 45023 - 44865
Alignment:
Q  490 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 587  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  45023 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44924  T
Q  588 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  44923 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 491 - 644
Target Start/End: Complemental strand, 49602 - 49445
Alignment:
Q  491 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 588  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  589 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 644  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 764 - 803
Target Start/End: Complemental strand, 44747 - 44708
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44747 aaccttagaatcagaaactgcttctgaactgcttctgaac 44708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 764 - 803
Target Start/End: Complemental strand, 49327 - 49288
Alignment:
Q  764 aaccttagaatcagaaactgcttctgaactgcttctgaac 803  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  49327 aaccttagaatcagaaactgcttatgaactgcttctgaac 49288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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