View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5897-Insertion-3 (Length: 952)
Name: NF5897-Insertion-3
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 447 - 947
Target Start/End: Original strand, 27918134 - 27918648
Alignment:
| Q |
447 |
tcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccgatcttgattaataattcaaatactacattgttccccaatattcaag |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27918134 |
tcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccaatcttgattaataattcaaatactacattgttccccaatattcaag |
27918233 |
T |
|
| Q |
547 |
atgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctactggagtgaagatcatgccacaacca |
646 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27918234 |
atgcttagttcatttgttgagaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctactggagtgaagatcatgccacaacca |
27918333 |
T |
|
| Q |
647 |
caggtcacgagcctgctgatgatgttatgaaaggttactttgctgttcttgcaaagaagggtttagaaactagaaggtttattgttgggttagattacct |
746 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27918334 |
caggtcacgagcttgctgatgatgttatgaaaggttactttgctgttcttgcaaagaagggtttagaaactagaagatttattgttgggttagattacct |
27918433 |
T |
|
| Q |
747 |
aactgatcctgcttttttgggattgcttgatgatgctt-ggaggagtatggcttcagacagaa-gggactcttgttgttccgtgtcgaccaatcgattta |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27918434 |
aactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggcttcagacagaaggggactcttgttgttccgtgtcgaccaatcgattta |
27918533 |
T |
|
| Q |
845 |
cagatcattct-gaga--gaggcagcac--acatc-agatgaaagaaat-atgatatttgaagt--agattctctctatttctc-aaatatcatga-ggc |
933 |
Q |
| |
|
||||||||||| |||| ||||||||| |||| ||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||| ||| |
|
|
| T |
27918534 |
cagatcattctggagaagaaggcagcaccagcatcaagatgaaagaaataatgatattcgaagttaagattctctctatttctcaaaatatcatgagggc |
27918633 |
T |
|
| Q |
934 |
t-cgttcacgagaga |
947 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
27918634 |
tccgttcacgagaga |
27918648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 9 - 399
Target Start/End: Original strand, 27917697 - 27918086
Alignment:
| Q |
9 |
ctttgtaggtttgtattaattggttaaccaagcatatcaataagtgtgacatatgtgatagatacttgagtttttaaaatatg----tagttagagattt |
104 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||| |
|
|
| T |
27917697 |
ctttgttggtttgtattaattggttagccaagcatatcaataagtgtgacatatgtgatagatatttgagttttttaaacatgcatgtagttagagattt |
27917796 |
T |
|
| Q |
105 |
gattcgcgatcaatatacgaaaaacatacttcagtggtatacaagtatacttacttcagtttaccaaacaagaaaaacatatatatcacgatgcagtaaa |
204 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27917797 |
gattcgtgatcaatatacaaaaaacatacttcagtggtatacaagtatacttacttcagtttaccaaacaagaaaaacatat----cacgatgcagtaa- |
27917891 |
T |
|
| Q |
205 |
gtgggcattggatatagctatggacaacaaattcaaggcccagcctctaaagtatacgaaatttttggctaatgagagggaagtaattgacctatcgaat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27917892 |
gtgggcattggatatagctatggacaacaaattcaaggccctgcctctaaagtatacgaaatttttggctaatgagagggaagtaattgacctatcgaat |
27917991 |
T |
|
| Q |
305 |
aatggcaatgaatgctgtatacagaggtagacccacctgtaccgtatattaactggctatgtataacctagagttaagaaatatcgtgttcttgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27917992 |
aatggcaatgaatgctgtatacagaggtagacccacctgtaccgtatattaactggctatgtgtaacctagagttaagaaatatcgtgttcttgt |
27918086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 536 - 855
Target Start/End: Original strand, 27896116 - 27896434
Alignment:
| Q |
536 |
caatattcaagatgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctactggagtgaagatca |
635 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
27896116 |
caatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatca |
27896215 |
T |
|
| Q |
636 |
tgccacaaccacaggtcacgagcctgctgatgatgttatgaaaggttactttgctgttcttgcaaagaagggtttagaaactagaaggtttattgttggg |
735 |
Q |
| |
|
||||||||||||| || || | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27896216 |
tgccacaaccacaagt---gatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgttggg |
27896312 |
T |
|
| Q |
736 |
ttagattacctaactgatcctgcttttttgggattgcttgatgatgctt-ggaggagtatggcttcagacagaaggg-actcttgttgttccgtgtcgac |
833 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||||||||||| | |
|
|
| T |
27896313 |
ttagattacttaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaagggaactcttgttgttccgtgtcggc |
27896412 |
T |
|
| Q |
834 |
caatcgatttacagatcattct |
855 |
Q |
| |
|
| ||||| || |||| |||||| |
|
|
| T |
27896413 |
cgatcgacttgcagaacattct |
27896434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 536 - 848
Target Start/End: Original strand, 27929786 - 27930091
Alignment:
| Q |
536 |
caatattcaagatgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctactggagtgaagatca |
635 |
Q |
| |
|
||||||||||||||||||| || ||||||| || | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27929786 |
caatattcaagatgcttagttcttttgttggtaaagcacaaaagagtttatcagtctttgtacccagaaagcatgcattgagctactggaatgaagatca |
27929885 |
T |
|
| Q |
636 |
tgccacaaccacaggtcacgagcctgctgatgatgttatgaaaggttactttgctgttcttgcaaagaagggtttagaaactagaaggtttattgttggg |
735 |
Q |
| |
|
||||||||| | | ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27929886 |
tgccacaact---------ggggttgccgatgatgtcatgaaaggttactttgctgttcttgcaaagaagggtgaagaaactagaaggtttattgttggg |
27929976 |
T |
|
| Q |
736 |
ttagattacctaactgatcctgcttttttgggattgcttgatgatgctt-ggaggagtatggcttcagacagaaggg-actcttgttgttccgtgtcgac |
833 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||||||||||| | |
|
|
| T |
27929977 |
ttagattacttaactgatcctgcttttttgggattgcttgatgatgcttgggaggagtatggttttagacagaagggaactcttgttgttccgtgtcggc |
27930076 |
T |
|
| Q |
834 |
caatcgatttacaga |
848 |
Q |
| |
|
| || || ||||||| |
|
|
| T |
27930077 |
cgatagaattacaga |
27930091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 539 - 825
Target Start/End: Original strand, 27923414 - 27923693
Alignment:
| Q |
539 |
tattcaagatgcttaggtcatttgttgagaaggtacaaaagagtttatcggtctttgtaccaagaaagcatgcattgagctactggagtgaagatcatgc |
638 |
Q |
| |
|
|||||||||||||||| || ||||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27923414 |
tattcaagatgcttagttcttttgttggtaaagtacaaaagagtttatcactctttgtaccgagaaagcatgcattgagctactggagtgaagatcatgc |
27923513 |
T |
|
| Q |
639 |
cacaaccacaggtcacgagcctgctgatgatgttatgaaaggttactttgctgttcttgcaaagaagggtttagaaactagaaggtttattgttgggtta |
738 |
Q |
| |
|
|||| | | | ||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
27923514 |
cacagct---------ggggttgccgatgatgtcatgaaaggttactttgctgttcttgcaaggaagggtgaggaaactagaaggtttattgttggatta |
27923604 |
T |
|
| Q |
739 |
gattacctaactgatcctgcttttttgggattgcttgatgatgctt-ggaggagtatggcttcagacagaaggg-actcttgttgttcc |
825 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
27923605 |
gattacttaactgatcctgcttttttgggattgcttgatgatgcttcggaggaatatggtttcaggcagaagggaactcttgttgttcc |
27923693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 262 - 393
Target Start/End: Original strand, 27895878 - 27896010
Alignment:
| Q |
262 |
gaaatttttggctaatgagagggaagtaattgacctatcgaataatggcaatgaatgctgtatacagag-gtagacccacctgtaccgtatattaactgg |
360 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| || || || | ||||||||| ||||||| |||||| ||| |
|
|
| T |
27895878 |
gaaatttttggctaatgagatggaagtaattgacctatcgaataatatcaataaatgcagtgtatagggcaaagacccaccggtaccgtctattaagtgg |
27895977 |
T |
|
| Q |
361 |
ctatgtataacctagagttaagaaatatcgtgt |
393 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| |
|
|
| T |
27895978 |
ctacgtataacctagagttcagaaatatcgtgt |
27896010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 27896005 - 27896090
Alignment:
| Q |
447 |
tcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccgatcttgattaataattcaaatactacattgttc |
533 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| |||| ||||||| |||| || |||| |||||||||| | ||||||| |||||| |
|
|
| T |
27896005 |
tcgtgtcctcgttcagcataaatagccaaac-ctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttc |
27896090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University