View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897-Insertion-5 (Length: 855)
Name: NF5897-Insertion-5
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 612; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 9 - 669
Target Start/End: Complemental strand, 45530779 - 45530119
Alignment:
| Q |
9 |
gctatctgtcaagcaatatcccaaggcttttgaatcaacaaagaactagttcagactagcaacggttatatatcaatatcgtttaccaaactatggctat |
108 |
Q |
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| T |
45530779 |
gctatctgtcaagcaatatcccaaggcttttgaatcaacaaagaactagttcagactagcaacggttatatatcaatatcgtttaccaaactatagctat |
45530680 |
T |
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| Q |
109 |
ttcaacaagnnnnnnncattattaagagtaaaaaggagtttcataagagcaatagttatgttgtgttacacgagcaactgatcaagcaatgatatgtatt |
208 |
Q |
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| T |
45530679 |
ttcaacaagaaaaaaacattattaagagtaaaaaggagtttcataagagcaatagttatgttgtgttacacgagcaactgatcaagcaatggtatgtatt |
45530580 |
T |
|
| Q |
209 |
tggagataaagcacacactaaattgatttcaatagctaaggccagtatattttgggttatttggcacttcttctacttcaaaaatagtataggagaaatg |
308 |
Q |
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| T |
45530579 |
tggagataaagcacacactaaattgatttcaatagctaaagccaatatattttgggttatttgtcacttcttctacttcaaaaatagtataggagaaatg |
45530480 |
T |
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| Q |
309 |
aatggaatgtgtgtggtcacagatcctaaatctgcagtaagctagatgttttctagttaacaattattgagaagaaaaagatgcataacaaccggtttaa |
408 |
Q |
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| T |
45530479 |
aatggaatgtgtgtggtcacagatcctaaatctgcagtaagctagatgttttctagttaacaattattgagaagaaaaagatgcataacaaccggtttaa |
45530380 |
T |
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| Q |
409 |
taaatgccatcaaaagcaaactactgatcatagctcagaaggtttctcagaaaaaaggggattgcattggtgattcggagtttggcctcaaggcaagttt |
508 |
Q |
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| T |
45530379 |
taaatgccatcaaaagcaaactactgatcatagctcagaaggtttctcagaaaaaaggggattgcattggtgattcggagtttggcctcaaggcaagttt |
45530280 |
T |
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| Q |
509 |
gaccaatgatagttcaaataagggattgaactcaagtactcttcatcaattcaaccttacctgaagctcaataactacttgagtctaaccccttggtttg |
608 |
Q |
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| T |
45530279 |
gaccaatgatagttcaaataagggattgaactcaagtactcttcatcaattcaaccttacctgaagctcaataactacttgagtctaaccacttggtttg |
45530180 |
T |
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| Q |
609 |
aaatttcaatagtctgcaacaatggtttgagcaaatatacaatgttatggtaccaacttat |
669 |
Q |
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| T |
45530179 |
aaatttcaatagtctgcaacaatggtttgagcaaatatacaacgttatggtaccaacttat |
45530119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 668 - 779
Target Start/End: Complemental strand, 45530033 - 45529922
Alignment:
| Q |
668 |
atacatatagatacgaatattgtactaagtagttgtcacaaatacttccctgtagtagaatgaaagaaaaagctcactattagttaaaacaagcttaaat |
767 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45530033 |
atacatatagatacgattattgtaccaagtagttgtcacaaatacttccctgtagtagaatgaaagaaaaagctcactattagttaaaacaagcttaaat |
45529934 |
T |
|
| Q |
768 |
atcagctaattg |
779 |
Q |
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| T |
45529933 |
atcagctaattg |
45529922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 780 - 855
Target Start/End: Complemental strand, 45529893 - 45529816
Alignment:
| Q |
780 |
gaccagcacatcaaaattccaacgtgttaatcctcaaactaggcaa-taaactat-aatctgctttcggaacctaatg |
855 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
45529893 |
gaccagcacatcaaaattccaacatgttaatcctcaaactaggcaattaaactataaatctgctttcggaacctaatg |
45529816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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