View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897-Insertion-6 (Length: 757)
Name: NF5897-Insertion-6
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897-Insertion-6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 421 - 757
Target Start/End: Original strand, 42190580 - 42190912
Alignment:
| Q |
421 |
acccgagagttggccgccaacaattagcatannnnnnnacattctcaaccctgaaaattatcatgtcatttaaaatacatttcataactattatgagatc |
520 |
Q |
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| T |
42190580 |
acccgagagttggccgctaacaattagcatatttttttacattctcaaccctgaaaattatcatgtcatttaaaatacatttcataactattatgagatc |
42190679 |
T |
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| Q |
521 |
ggtactcatgtatatttttatttatttatatggaagcacatgagacttattagttattacaaacacgtatagattgcatcggttagtacagacagattaa |
620 |
Q |
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| T |
42190680 |
ggtactcatgtatatttttatttatttatatggaagcacatgagacttattagttattacaaacacgtatagattgcatcggttagt----acagattaa |
42190775 |
T |
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| Q |
621 |
acatgtatagaaggaatgagaccaacatcacaagccaagatagatggattaattccatgcaattttgataaggcctctcacatgacaaaccaactctcat |
720 |
Q |
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| T |
42190776 |
acatgtatagaaggaatgagaccaacatcacaagccaagatagatggcttaattccatgcaattttgataaggcctctcacatgacaaaccaactctcat |
42190875 |
T |
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| Q |
721 |
tacagcagttatggactcctcaactttatgcatccca |
757 |
Q |
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| T |
42190876 |
tacagcagttatggactcctcaactttatgcatccca |
42190912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 42190141 - 42190434
Alignment:
| Q |
8 |
aaagaggtataacagtgctactccaaattcgaaatatgatacaagtaacatttaaaacaggtgaaaaaatatgtacagatgcattgcatggaattcgatc |
107 |
Q |
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| T |
42190141 |
aaagaggtataacagtgctactccaaattcgaaatatgatacaagtaacatttaaaacaggtgaaaaa-tatgtacagatgcattgcatggaattcgatc |
42190239 |
T |
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| Q |
108 |
catataatttgaaatcacgataagtctct-aagtttggcttcatgaaagccatagagtgactttaggtatgaaactcaaatgtgataagcttttaagtcc |
206 |
Q |
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| T |
42190240 |
catagaatttgaaatcatgataagtctcttaagtttggcttcatgaaagccatagagtgactttaggtatgaaactcaaatgtgataagcttttaagtcc |
42190339 |
T |
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| Q |
207 |
aaaccttctacatttttaaattggtaaagttgattaggctgaaaac--tgtgaccaaaataaggtatgtataagtaattaacttagattactcct |
299 |
Q |
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| T |
42190340 |
aaaccttctaaagttttaaattggtaaagttgattaggctgaaaactatgtgaccaaaataaggtatgtataagtaattaacttcgatttctcct |
42190434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 704
Target Start/End: Original strand, 42209267 - 42209360
Alignment:
| Q |
612 |
acagattaaacatgtatagaaggaatgagaccaacatcacaagccaag-atagatggattaattccatgcaattttgataaggcctctcacatg |
704 |
Q |
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| T |
42209267 |
acagattatacaagtatagcaggcatcagaccaacatcacaagcctagtatagactgcttaattccatgcaattttgataaggcttctctcatg |
42209360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 519
Target Start/End: Original strand, 42209158 - 42209193
Alignment:
| Q |
484 |
tgtcatttaaaatacatttcataactattatgagat |
519 |
Q |
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| T |
42209158 |
tgtcattttaaatacatttcataactattatgagat |
42209193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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