View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897-Insertion-8 (Length: 544)

Name: NF5897-Insertion-8
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897-Insertion-8
NF5897-Insertion-8
[»] chr1 (1 HSPs)
chr1 (8-544)||(269360-269898)
[»] chr8 (1 HSPs)
chr8 (459-544)||(29274353-29274438)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 8 - 544
Target Start/End: Complemental strand, 269898 - 269360
Alignment:
Q  8 atatattggcataatcatcctttgcaaaacaatttttgagtaactcctgaaattgacattcattctcacatcagaaattgaaagagttttaactcctgaa 107  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  269898 atatattggcataatcatcctttgcaaaacaacttttgaataactcctgaaattgacattcattctcacatcagaaattgaaagagttttaactcctgaa 269799  T
Q  108 atccagattgcttgattcgagagattattgactattgttgttttattagtacaagctaaattcaaaagatgtcctggtgtgaatacaataaatggcaatg 207  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  269798 atccagattgcttgattcgagagattatcgactatttttgttttattagtacaagctaaattcaaaagatgacctggtgtgaatacaataaatggcaatg 269699  T
Q  208 cagttcaaattcttaatgggataatatgaaacctcaataatgtgatggtatgtatgcataagaaaatcttcatttaattgaattaaatcagaaatctagt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  269698 cagttcaaattcttaatgggataatatgaaacctcaataatgtgatggtatgtatgcataagaaaatcttcatttagttgaattaaatcagaaatctagt 269599  T
Q  308 ttccatttggttagcatttttaattctatttctcaaatctttaacgatttgtgaaccatctggtgtaacatcctttaggagtacctatatcttgcttgct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  269598 ttccatttggttagcatttttaattctatttctcaaatctttaacgatttgtgaaccatctggtgtaacatcctttaggagtacctatatcttgcttgct 269499  T
Q  408 tatgtggttccaattttctctcaaatatccatctctcagcttaacattaaggtgattatcttattccgacattcccctacaccatatgcaatctaactcc 507  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  269498 tatttggttccaattatctctcaaatatccatctctcagcttaacattaaagtgattatcttattccgacattcccctacaccatatgcaatctaactcc 269399  T
Q  508 ttaac--atcccgaataactctactcttggaaaggttca 544  Q
    |||||  ||| ||||||||||||||||||||||||||||    
T  269398 ttaacatatcacgaataactctactcttggaaaggttca 269360  T

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Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 459 - 544
Target Start/End: Complemental strand, 29274438 - 29274353
Alignment:
Q  459 gtgattatcttattccgacattcccctacaccatatgcaatctaactccttaacatcccgaataactctactcttggaaaggttca 544  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  29274438 gtgagtatcttattccgacattcccctacaccatatgcaatctaactccttaacatcacgaataactctactcttgaaaaggttca 29274353  T

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