View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897-Insertion-9 (Length: 517)

Name: NF5897-Insertion-9
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897-Insertion-9
NF5897-Insertion-9
[»] chr4 (12 HSPs)
chr4 (9-334)||(37252927-37253252)
chr4 (52-331)||(37232684-37232960)
chr4 (401-504)||(37252745-37252848)
chr4 (9-149)||(37237772-37237912)
chr4 (157-327)||(37257059-37257238)
chr4 (50-165)||(37245014-37245129)
chr4 (243-322)||(37244881-37244960)
chr4 (69-162)||(37241994-37242087)
chr4 (61-125)||(37257240-37257304)
chr4 (188-239)||(37237700-37237751)
chr4 (75-167)||(37242193-37242285)
chr4 (403-471)||(37256922-37256990)
[»] scaffold1652 (2 HSPs)
scaffold1652 (52-157)||(396-501)
scaffold1652 (254-329)||(595-670)
[»] chr6 (8 HSPs)
chr6 (244-328)||(14316682-14316766)
chr6 (243-328)||(14253954-14254039)
chr6 (249-328)||(14248144-14248223)
chr6 (86-157)||(14254119-14254190)
chr6 (85-160)||(14316847-14316922)
chr6 (98-160)||(14248312-14248374)
chr6 (59-209)||(14351689-14351839)
chr6 (50-128)||(14248539-14248617)
[»] scaffold1176 (3 HSPs)
scaffold1176 (52-167)||(1294-1409)
scaffold1176 (249-328)||(371-450)
scaffold1176 (52-157)||(177-282)
[»] scaffold0902 (2 HSPs)
scaffold0902 (251-328)||(3200-3277)
scaffold0902 (87-167)||(3361-3441)
[»] scaffold1801 (2 HSPs)
scaffold1801 (83-167)||(92-176)
scaffold1801 (250-290)||(268-308)
[»] scaffold0002 (1 HSPs)
scaffold0002 (50-128)||(165109-165187)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 37253252 - 37252927
Alignment:
Q  9 tcaatctccatctttatctcccaccatatcccctgttgccacacctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaag 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  37253252 tcaatctccatcttcatctcccaccatatcccctgttgccacacctgcgatctctccctccgctgactcaccggcggcatctgctcccatacctgtgaag 37253153  T
Q  109 aacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37253152 aacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcat 37253053  T
Q  209 ccatctccactcctccttctgaaggaccttccgaaaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgc 308  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37253052 ccatttccactcctccttccgaaggaccttccgaaaacggtgccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgc 37252953  T
Q  309 tttgatgctatagagagttactcgag 334  Q
    |||||| |||||||||||||||||||    
T  37252952 tttgatactatagagagttactcgag 37252927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 52 - 331
Target Start/End: Complemental strand, 37232960 - 37232684
Alignment:
Q  52 cctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccat 151  Q
    ||||||||||||||||||||| |||||||||| |||||| |||| | ||||||||||||  ||||||||||||| || || |||||||||||||||||||    
T  37232960 cctgcgatctctccctccgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccat 37232861  T
Q  152 ctcctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccatctccactcctccttctgaaggaccttccgaaaacggcgc 251  Q
    |||||||||||||||| || |  || ||||| | | |||||||| ||||||||||||| ||||||||||||||| |||||| ||| ||   |||||||||    
T  37232860 ctcctcctcctgcttcctctggttcacccgccgccgctcctgctgttactccatcatcgatctccactcctcctgctgaagcaccatc---aaacggcgc 37232764  T
Q  252 cgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagttactc 331  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||| | |||||||||||||    
T  37232763 cgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgtagagagttactc 37232684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 401 - 504
Target Start/End: Complemental strand, 37252848 - 37252745
Alignment:
Q  401 tgttgtttctcggtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttattactttaattaatcagtgatacattttttat 500  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  37252848 tgttgtttctctgtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttattactttaattaatcagtgacacattttttct 37252749  T
Q  501 tctt 504  Q
    ||||    
T  37252748 tctt 37252745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 37237912 - 37237772
Alignment:
Q  9 tcaatctccatctttatctcccaccatatcccctgttgccacacctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaag 108  Q
    ||||||||| || | |||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  37237912 tcaatctccttcatcatctccaaccatatcacccgttgccacacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacctgtgaag 37237813  T
Q  109 aacgctccatctccttcaccttcagccatcaactctccacc 149  Q
    |   |||||||||||| | | || ||| |||||||||||||    
T  37237812 acgtctccatctcctttagcatccgccgtcaactctccacc 37237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 157 - 327
Target Start/End: Complemental strand, 37257238 - 37257059
Alignment:
Q  157 cctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccatctccactcctccttctgaag------gaccttccgaaaa---cg 247  Q
    ||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||       |||||| || ||   ||    
T  37257238 cctcctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccg 37257139  T
Q  248 gcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtt 327  Q
     ||||||||| |||||||| |||||||| ||||||||||||||  ||||||||||||| ||||||||| | |||||||||    
T  37257138 ccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgtagagagtt 37257059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 37245129 - 37245014
Alignment:
Q  50 cacctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccacc 149  Q
    |||| ||||| |||||||||||| ||||| |||||||||||||||| || |||| ||||| |  ||| ||||| ||||| ||  ||| ||||||||||||    
T  37245129 caccagcgatttctccctccgctaactcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccacc 37245030  T
Q  150 atctcctcctcctgct 165  Q
    ||||||||||||||||    
T  37245029 atctcctcctcctgct 37245014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 37244960 - 37244881
Alignment:
Q  243 aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctataga 322  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || | ||||||| ||||||    
T  37244960 aaacggcgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgatataga 37244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 37242087 - 37241994
Alignment:
Q  69 cgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcct 162  Q
    |||| ||||||||| ||||||| |||| |||||||| | || |  ||| ||||||||||| || ||||||||||||||||||||||||||||||    
T  37242087 cgctaactcaccggtggcatcttctcccgtacctgtaacgagcagtccttctccttcaccgtccgccatcaactctccaccatctcctcctcct 37241994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 37257304 - 37257240
Alignment:
Q  61 tctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttc 125  Q
    ||||| ||||||| |||||||| ||||||| |||| |||||||||||||||||||| ||||||||    
T  37257304 tctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaagaacgctccttctccttc 37257240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 37237751 - 37237700
Alignment:
Q  188 ctcctgctcttactccatcatccatctccactcctccttctgaaggaccttc 239  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  37237751 ctcctgctgttactccatcatccatctctactcctccttctgaagcaccttc 37237700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 37242285 - 37242193
Alignment:
Q  75 ctcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttc 167  Q
    ||||||||||| |||| |||| || ||| ||| ||||||||||||||||||||| |  ||  | |||| |||| |||||||||||||||||||    
T  37242285 ctcaccggcggtatcttctcccgttcctttgatgaacgctccatctccttcaccgttcgcagttaactatccaacatctcctcctcctgcttc 37242193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 471
Target Start/End: Complemental strand, 37256990 - 37256922
Alignment:
Q  403 ttgtttctcggtttcgatctgtgcgacgacgatttattcattcgattattttctgtaatctatttatta 471  Q
    ||||| ||| ||||||||||||| ||| || ||| |||||||  |||||||||||||||||||| ||||    
T  37256990 ttgttgctctgtttcgatctgtgtgactaccattcattcattttattattttctgtaatctattgatta 37256922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 396 - 501
Alignment:
Q  52 cctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccat 151  Q
    |||||||| |||||||||||| ||||| ||| |||||||||||| ||||||||||||| |  ||| ||||||||||| || |||||||||||||||||||    
T  396 cctgcgatttctccctccgctaactcaacggtggcatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat 495  T
Q  152 ctcctc 157  Q
    ||||||    
T  496 ctcctc 501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 595 - 670
Alignment:
Q  254 ctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagttac 329  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | |||||||||||    
T  595 ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgtagagagttac 670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 14316766 - 14316682
Alignment:
Q  244 aacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 328  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  14316766 aacgacgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta 14316682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 243 - 328
Target Start/End: Complemental strand, 14254039 - 14253954
Alignment:
Q  243 aaacggcgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 328  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||||||| | ||||||||||    
T  14254039 aaacgacgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagagtta 14253954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 14248223 - 14248144
Alignment:
Q  249 cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 328  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||| |  || ||||||||| | ||||||||||    
T  14248223 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgtagagagtta 14248144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 14254190 - 14254119
Alignment:
Q  86 catctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctc 157  Q
    |||||||||| ||||||||||||| |  ||| ||||||||||| || |||||||||||||||||||||||||    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccatctcctc 14254119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 14316922 - 14316847
Alignment:
Q  85 gcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctc 160  Q
    ||||||||||| ||||||||||||| |  ||| |||  |||||| || ||||||||||||||| ||||||||||||    
T  14316922 gcatctgctcccgtacctgtgaagagcagtccttctatttcaccgtctgccatcaactctccatcatctcctcctc 14316847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 14248374 - 14248312
Alignment:
Q  98 tacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctc 160  Q
    |||||||||||| |  ||| ||||||||||| || ||||||||||||||| ||||||||||||    
T  14248374 tacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccatcatctcctcctc 14248312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 14351839 - 14351689
Alignment:
Q  59 tctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcc 158  Q
    ||||||| |||||| ||||| || ||  |||| |||| || ||||| | ||| ||||||||||||||||  |  ||||| ||||||||  ||||  ||||    
T  14351839 tctctccttccgctaactcatcgacgatatcttctcccgttcctgttatgaatgctccatctccttcactgtttgccattaactctccgacatcctctcc 14351740  T
Q  159 tcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatc 209  Q
    || |||||| |  |  |||||||||||| |||||||| |||||||||||||    
T  14351739 tcatgcttcctttggttctcccgctgtcgctcctgctgttactccatcatc 14351689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 14248617 - 14248539
Alignment:
Q  50 cacctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcacc 128  Q
    ||||||| || |||||||||||||||||||| | ||| ||| |||| |||||| |||| |  ||||| |||||||||||    
T  14248617 cacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctctccttcacc 14248539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 1294 - 1409
Alignment:
Q  52 cctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccat 151  Q
    |||||||| |||||||| ||| ||||| ||||||||| |||||  ||||||||||||| |  ||| ||||||||||| |  |||||||||| ||||||||    
T  1294 cctgcgatttctccctcagctaactcaacggcggcatatgctcgtgtacctgtgaagagcagtccttctccttcaccgtgtgccatcaactgtccaccat 1393  T
Q  152 ctcctcctcctgcttc 167  Q
    ||||||||| ||||||    
T  1394 ctcctcctcatgcttc 1409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 249 - 328
Target Start/End: Original strand, 371 - 450
Alignment:
Q  249 cgccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 328  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||   || ||||||||| | ||||||||||    
T  371 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgtagagagtta 450  T

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Target: scaffold1176; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 177 - 282
Alignment:
Q  52 cctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccat 151  Q
    |||||||| |||||||| ||| ||||| | ||||| |||||||| | ||||||||||| |  ||| ||||||||||| || ||||||||||||  |||||    
T  177 cctgcgatttctccctcagctaactcaaccgcggcgtctgctcctgaacctgtgaagagcagtccttctccttcaccatctgccatcaactctagaccat 276  T
Q  152 ctcctc 157  Q
    ||||||    
T  277 ctcctc 282  T

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Target: scaffold0902 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 3277 - 3200
Alignment:
Q  251 ccgctttgaacagatttaccgttgccggatctgctgctgtggtggttttcgccgccgctttgatgctatagagagtta 328  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||||||| | ||||||||||    
T  3277 ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgtagagagtta 3200  T

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Target: scaffold0902; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 3441 - 3361
Alignment:
Q  87 atctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttc 167  Q
    ||||||||| ||||||||||||| |  ||| ||||||||||| || |||||||||||||||||||||||||||| ||||||    
T  3441 atctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccatctcctcctcatgcttc 3361  T

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Target: scaffold1801 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 92 - 176
Alignment:
Q  83 cggcatctgctccagtacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttc 167  Q
    ||||||||||||| || |||||||||| |  ||| ||||||||||| || |||||||||||||||| ||||||||||| ||||||    
T  92 cggcatctgctcctgttcctgtgaagagcagtccttctccttcaccgtctgccatcaactctccacaatctcctcctcatgcttc 176  T

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Target: scaffold1801; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 268 - 308
Alignment:
Q  250 gccgctttgaacagatttaccgttgccggatctgctgctgt 290  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  268 gccgctttgaacagatttacagttgccggatctgctgctgt 308  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 165109 - 165187
Alignment:
Q  50 cacctgcgatctctccctccgctgactcaccggcggcatctgctccagtacctgtgaagaacgctccatctccttcacc 128  Q
    ||||||| || |||||||||||||||||||| | ||| ||| |||| |||||| |||| |  ||||| |||||||||||    
T  165109 cacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctctccttcacc 165187  T

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