View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_11 (Length: 412)
Name: NF5897_high_11
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 57 - 405
Target Start/End: Original strand, 12141424 - 12141769
Alignment:
| Q |
57 |
cacttgggaagttttctcatagctagctaaccctagaggataatattttgaaatagtaagatcatcatcatcaaggaaactcaacatgactccaattaat |
156 |
Q |
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| T |
12141424 |
cacttgggaagttttttcatagctagctaaccctagaggataatattttgcaatagtaagatcatcatcatcaaggaaactcaacatgactccaattaat |
12141523 |
T |
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| Q |
157 |
ttggcaggacaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaat |
256 |
Q |
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| T |
12141524 |
ttggcaggacaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaat |
12141623 |
T |
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| Q |
257 |
ttggtgagatcttggaagctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgtatgtctatcttcttctctctatatttgaat |
356 |
Q |
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| T |
12141624 |
ttggtgagatcttggaagctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgtatgtcta---tcttctctctatattttaat |
12141720 |
T |
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| Q |
357 |
ttctttatcattatcatggttttattctatatattagaaggattgatct |
405 |
Q |
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| T |
12141721 |
ttctttatcattatcatgttttaattctatatattagaaggattgatct |
12141769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 174 - 327
Target Start/End: Original strand, 9036483 - 9036636
Alignment:
| Q |
174 |
tgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaatttggtgagatcttggaa |
273 |
Q |
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| T |
9036483 |
tgacacaacatttaccaaattatttgttggagggttagcttgggaaactcaaagggaaacaatgagaatgtattttgaacaatttggagagatcttagaa |
9036582 |
T |
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| Q |
274 |
gctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgta |
327 |
Q |
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| T |
9036583 |
gctgttgttatcactgataagtatactggaagatctaaaggttatggttttgta |
9036636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 327
Target Start/End: Original strand, 42251532 - 42251689
Alignment:
| Q |
170 |
ttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaatttggtgagatctt |
269 |
Q |
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| T |
42251532 |
ttggtgacacaacttatacgaagatttttgttggagggttagcttgggagaccaaaagagacacactcaaacgttactttgatcagtttggtgatatttt |
42251631 |
T |
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| Q |
270 |
ggaagctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgta |
327 |
Q |
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| T |
42251632 |
agaagctgttgtcatcactgacagaaccactggaaaatcaaaaggatatggctttgta |
42251689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 332
Target Start/End: Original strand, 26613474 - 26613641
Alignment:
| Q |
165 |
acaatttggtgacacaacttacaccaaagtttttgttggaggattggcttgggaaactcaaaaagagactatgaagaagtattttgagcaatttggtgag |
264 |
Q |
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||||||||| |||||||| | ||| || ||||||||||||||| | ||||||||||||| || || |||| | |||||||| ||||||||||| |
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| T |
26613474 |
acaatttggagacacaacattcactaaggtttttgttggaggactagcttgggaaactccaactgatgaaatgagaacatattttgaacaatttggtgac |
26613573 |
T |
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| Q |
265 |
atcttggaagctgttgttatcactgacaaagccactggaagatccaaaggctatggatttgtatgtct |
332 |
Q |
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|| | |||||||| |||||||||| || ||| |||| ||| ||||| || |||||||||||||| |
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| T |
26613574 |
atacttgaagctgtcattatcactgataagaacacaggaaaatctaaaggatacggatttgtatgtct |
26613641 |
T |
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