View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_14 (Length: 384)
Name: NF5897_high_14
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 70 - 369
Target Start/End: Original strand, 4741775 - 4742073
Alignment:
| Q |
70 |
aaggataggaaaatcaattaccaaggaatttagcatcgtgccatgattttaaaagcaaaaatggacatttcaattcacataatttcgtggcgcaaaataa |
169 |
Q |
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| T |
4741775 |
aaggataggaaaatcaattaccaaggaatttagcatcgtgcctcaattctaaa-gcataaatcaacatttcaattcacataattttgtggcgggagagaa |
4741873 |
T |
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| Q |
170 |
ttgattcatgaaacaatttgggggagtgtcaaaacaagatttgaattctgaaacaaaccgtgacacgatattgctacattgtggcacaatgttacattga |
269 |
Q |
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| T |
4741874 |
gtgcatcatgaaacgatttgaaggagtgtcaaaataaaatttgaattctgaaactaatcgtgacacaatattgctacattgtggcacaatgttacattga |
4741973 |
T |
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| Q |
270 |
tgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatcatgacgctatctataaatgtatctttaggttgattcggttctgtttt |
369 |
Q |
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| T |
4741974 |
tgtttcctaacataaaagacaagtgaagtatcacgccacgatctatgagtatcatgacacaatttataaatgtaactttagattggtacggttcggtttt |
4742073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 4753231 - 4753325
Alignment:
| Q |
228 |
cgtgacacgatattgctacattgtggcacaatgttacattgatgcttcctgacatataagacaagtgaagtatcgcgccacgatctatgagcatc |
322 |
Q |
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| T |
4753231 |
cgtgacacgatttttctacattatggcacgattttacattgatgcctcgtgacacgtaagacaagtgaaggatcacgctacgacctatgagcatc |
4753325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 4741086 - 4741121
Alignment:
| Q |
21 |
aagaatataagagaataatttattctttaatgcatg |
56 |
Q |
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| T |
4741086 |
aagaatataagagaataatttattctttaatgcatg |
4741121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 4752933 - 4752969
Alignment:
| Q |
21 |
aagaatataagagaataatttattctttaatgcatgc |
57 |
Q |
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| T |
4752933 |
aagaatataacagaataatttattctttaatgcatgc |
4752969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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