View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_19 (Length: 296)
Name: NF5897_high_19
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_19 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 44881707 - 44881427
Alignment:
| Q |
19 |
atgagatctgtgtaaataaaactcctaatcattgtaatcagagcattccacnnnnnnnn--cttttaattcatagataatcaaattatttctgaattatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44881707 |
atgagatctgtgtaaataaaactcctaatcattgtaatcagagcattccacatttttttttcttttaattcatagataatcaaattatttctgaattatt |
44881608 |
T |
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| Q |
117 |
cagaaatacacta-acaaccttaattccaactttgtatcaatccagagaaacatagcattgctagtnnnnnnntgcctaactcttttcgttcattaggat |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
44881607 |
cagaaatacactacacaaccttaattccaactttgtatcaatccagagaaacatagcattgctagtaaaaaaatgtctaactcttttcgttcattaggat |
44881508 |
T |
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| Q |
216 |
gcttatattatactactgtttcctggtttaaatgtacagaggctcaaagaatcacaaataaattcagaaagaaccttcttg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881507 |
gcttatattatactactgtttcctggtttaaatgtacagaggctcaaagaatcacaaataaattcagaaagaaccttcttg |
44881427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 44863808 - 44863677
Alignment:
| Q |
19 |
atgagatctgtgtaaataaaactcctaatcattgtaatcagagcattccacnnnnnnnncttttaattcatagataatcaaattatttctgaattattca |
118 |
Q |
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||||||||| |||||| |||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
44863808 |
atgagatctatgtaaaaaaaactactaatcattgtgatcagagcattccagtttttcttttttcaattcatagataatcaaattatttctgaattattca |
44863709 |
T |
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| Q |
119 |
gaaatacacta-acaaccttaattccaacttt |
149 |
Q |
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|| |||| ||| |||||||||||||||||||| |
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| T |
44863708 |
gagatacgctacacaaccttaattccaacttt |
44863677 |
T |
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