View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_29 (Length: 249)
Name: NF5897_high_29
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42476171 - 42476416
Alignment:
| Q |
1 |
aattagttgaatctgaactcgagtcagagttctatttcttatatggtattgttgagttttgaatcacaattaggattttagaattatgaagttttattta |
100 |
Q |
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| T |
42476171 |
aattagttgaatctgaactcgagtcagagttctatttcttatatggtattgttgagttttgaatcacaattaggattttagaattatgaagttttattta |
42476270 |
T |
|
| Q |
101 |
ttgttatgttagtcatcgtaaccatgtggtaacaaacacttggaacttaattgatgtccttaaatattttactatattcagattttaatagcaaactttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42476271 |
ttgttatgttagtcatcgtaaccatgtggtaacaaacacttggaacttaattgatgtccttaaattttttactatattcagattttaatagcaaactttt |
42476370 |
T |
|
| Q |
201 |
tcatttattacaaatttgaattcaatcggtccaattcatctcactc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42476371 |
tcatttattacaaatttgaattcaatcggtccaattcatttcactc |
42476416 |
T |
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