View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_33 (Length: 235)
Name: NF5897_high_33
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42475815 - 42475595
Alignment:
| Q |
1 |
tacaccgaaaaaagtgttataaaaaattgtatcgtaannnnnnnnnccacactcaactcaaccaacatatagcacgatctgtgtacagaatttgtcatga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42475815 |
tacaccgaaaaaagtgttataaaaaattgtatcgtaatttttttttccacactcaactcaaccaacatatagcacgatctgtgtacagaatttgtcatga |
42475716 |
T |
|
| Q |
101 |
atacttgtcaactgcaataatcaaaacttaattaagtaatactcctattaactttgtccatacgcaacaacgctctcataaacagatcctatcatacttg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42475715 |
atacttgtcaactgcaataatcaaaacttaattaagtaatactcctattaactttgtccatacgcaacaacgctctcataaacagatcctatcatacttg |
42475616 |
T |
|
| Q |
201 |
tacatgagatttattaaaggt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
42475615 |
tacatgagatttattaaaggt |
42475595 |
T |
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