View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897_high_34 (Length: 235)

Name: NF5897_high_34
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897_high_34
NF5897_high_34
[»] chr3 (5 HSPs)
chr3 (24-116)||(36515977-36516069)
chr3 (131-219)||(36805262-36805351)
chr3 (24-86)||(36520252-36520314)
chr3 (24-79)||(36805157-36805217)
chr3 (179-219)||(36515880-36515920)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 36516069 - 36515977
Alignment:
Q  24 gtaagattttatgaactatatcatgagagataaggattttattactcatcaaaggtcagattgagttagtgccacttaagtaacatagcaaag 116  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36516069 gtaagattttatgaaatatatcacgagaaataaggattttattactcatcaaaggtcagattgagttagtgccacttaggtaacatagcaaag 36515977  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 36805262 - 36805351
Alignment:
Q  131 aagaagttaaactaatccacctaaattgataac-aggggaattgaatcggcaacctagagagaacataacaaagttgttattcaagttgt 219  Q
    |||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  36805262 aagaagttaaactaatcctcctaaattgataactaggggaatcaaatcggcaacctagagagaacataacaaagttgttattcaagttgt 36805351  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 36520314 - 36520252
Alignment:
Q  24 gtaagattttatgaactatatcatgagagataaggattttattactcatcaaaggtcagattg 86  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  36520314 gtaagattttatgaactatatcatgagagagaaggattttattactcatcaaagatcggattg 36520252  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 36805157 - 36805217
Alignment:
Q  24 gtaagattttatgaactatatca-----tgagagataaggattttattactcatcaaaggt 79  Q
    |||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  36805157 gtaagattttatgaactatatcaattcatgagagataaggattttattactcatcaaaggt 36805217  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 36515920 - 36515880
Alignment:
Q  179 gcaacctagagagaacataacaaagttgttattcaagttgt 219  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  36515920 gcaacctagggagaacgtaacaaagttgttattgaagttgt 36515880  T

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