View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_35 (Length: 229)
Name: NF5897_high_35
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 11816032 - 11815816
Alignment:
| Q |
14 |
attgtattgtataatctaaaaccctatttttggaagatacaaacaaaagtacttgt--atattagtgttttattttcatatgtgcagaatcacaatgcta |
111 |
Q |
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| T |
11816032 |
attgtattgtataatctaaaaccctatttttggaagatacaaacaaaagtacttgtgtatattagtgtttt-ttttcatatgtgcagaatcacaatgcta |
11815934 |
T |
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| Q |
112 |
aagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttccttaa |
211 |
Q |
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| T |
11815933 |
aagttggaacattccttccttttggagcaggaagtaggcactgtcctgggagtgacttggctaaaattgaaatatccatttttctacattatttccttaa |
11815834 |
T |
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| Q |
212 |
taattacaagtgagctct |
229 |
Q |
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| T |
11815833 |
taattacaagtgagctct |
11815816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 11800101 - 11799983
Alignment:
| Q |
91 |
atgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccat |
190 |
Q |
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|||| ||| ||||||| || ||||||||||| || ||||||||||||||||||||| ||| ||||||| ||||||||||| ||| |||||| | | |
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| T |
11800101 |
atgttcaggatcacaaagcaaaagttggaacctttattccttttggagcaggaagtatgcattgtcctgcgagtgacttggcaaaacctgaaatttttgt |
11800002 |
T |
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| Q |
191 |
atttctacattatttcctt |
209 |
Q |
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| T |
11800001 |
atttctacattatttcctt |
11799983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 37436034 - 37436125
Alignment:
| Q |
117 |
ggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttcct |
208 |
Q |
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| T |
37436034 |
ggaacctttcttccttttggagcaggaagtaggctctgtcctggagccgacttagcaaaacttgaaatttctatatttcttcattatttcct |
37436125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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