View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5897_high_37 (Length: 217)

Name: NF5897_high_37
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5897_high_37
NF5897_high_37
[»] chr8 (11 HSPs)
chr8 (1-212)||(4321516-4321727)
chr8 (3-149)||(2743914-2744060)
chr8 (3-149)||(12958099-12958245)
chr8 (11-80)||(8034151-8034220)
chr8 (49-95)||(8878155-8878201)
chr8 (51-149)||(36994562-36994660)
chr8 (3-120)||(13468759-13468876)
chr8 (43-120)||(15682939-15683016)
chr8 (3-120)||(16701393-16701510)
chr8 (43-120)||(30936014-30936091)
chr8 (40-116)||(19715777-19715853)
[»] chr7 (15 HSPs)
chr7 (3-139)||(46373664-46373800)
chr7 (40-149)||(19477300-19477409)
chr7 (43-149)||(28537371-28537477)
chr7 (48-149)||(8839340-8839441)
chr7 (40-148)||(20207480-20207587)
chr7 (41-141)||(27484101-27484201)
chr7 (52-103)||(2871038-2871089)
chr7 (49-88)||(40211995-40212034)
chr7 (69-151)||(7190439-7190521)
chr7 (3-149)||(7265327-7265473)
chr7 (43-149)||(13254155-13254261)
chr7 (3-120)||(23731208-23731323)
chr7 (43-120)||(29059815-29059892)
chr7 (43-120)||(31492113-31492190)
chr7 (3-151)||(4059707-4059854)
[»] chr4 (10 HSPs)
chr4 (3-149)||(45994503-45994649)
chr4 (40-149)||(14854586-14854695)
chr4 (3-88)||(47023444-47023529)
chr4 (41-139)||(7096087-7096185)
chr4 (48-120)||(38766099-38766171)
chr4 (51-149)||(39097106-39097203)
chr4 (50-141)||(4710019-4710111)
chr4 (85-148)||(5974006-5974069)
chr4 (43-120)||(31307120-31307197)
chr4 (48-88)||(3649105-3649145)
[»] chr1 (12 HSPs)
chr1 (38-147)||(36982338-36982447)
chr1 (3-149)||(16756063-16756209)
chr1 (48-149)||(22022101-22022202)
chr1 (3-139)||(24801372-24801508)
chr1 (50-153)||(35540041-35540144)
chr1 (51-141)||(10648483-10648573)
chr1 (51-150)||(36086837-36086936)
chr1 (94-140)||(28506279-28506325)
chr1 (11-89)||(36522258-36522336)
chr1 (82-120)||(38465760-38465798)
chr1 (52-141)||(17600561-17600650)
chr1 (35-147)||(31733737-31733849)
[»] chr6 (11 HSPs)
chr6 (30-148)||(17457107-17457225)
chr6 (3-151)||(31107507-31107655)
chr6 (50-148)||(423637-423735)
chr6 (50-149)||(21910186-21910285)
chr6 (48-116)||(29185307-29185375)
chr6 (42-99)||(12836950-12837007)
chr6 (22-139)||(31489506-31489623)
chr6 (3-139)||(25084025-25084161)
chr6 (30-148)||(278374-278491)
chr6 (86-148)||(8507140-8507202)
chr6 (49-147)||(12411131-12411229)
[»] chr3 (7 HSPs)
chr3 (29-149)||(48204351-48204471)
chr3 (14-139)||(22288226-22288351)
chr3 (29-149)||(38088616-38088736)
chr3 (3-148)||(40294594-40294739)
chr3 (12-120)||(48210983-48211091)
chr3 (50-139)||(54877824-54877913)
chr3 (3-103)||(27763748-27763848)
[»] chr5 (3 HSPs)
chr5 (36-120)||(12682645-12682729)
chr5 (30-139)||(3525895-3526003)
chr5 (3-120)||(10591937-10592054)
[»] chr2 (6 HSPs)
chr2 (37-139)||(33756968-33757070)
chr2 (3-89)||(38463996-38464082)
chr2 (3-88)||(17981540-17981624)
chr2 (29-120)||(12133270-12133361)
chr2 (40-139)||(44752245-44752344)
chr2 (48-118)||(37568786-37568856)
[»] scaffold0068 (1 HSPs)
scaffold0068 (77-141)||(37155-37219)
[»] scaffold0182 (1 HSPs)
scaffold0182 (43-120)||(26341-26418)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4321516 - 4321727
Alignment:
Q  1 atactaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaac 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4321516 atactaatctttcgagtattatgtgacttaaatagacgacaagctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaac 4321615  T
Q  101 cttacttaaactagaagagatctatgtcatctcatctaaacactcttggattaggaccacataatttacactagacttaatgagaaaaatttaacggacc 200  Q
    ||||||||| |||||||| |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  4321616 cttacttaagctagaagaaatctatgtcatctcatctaaaccctcttggatcgggaccacataatttacactagacttaatgagaaaaatttaacggacc 4321715  T
Q  201 atctgtgctcct 212  Q
    || |||| ||||    
T  4321716 atttgtgttcct 4321727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 2744060 - 2743914
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||  ||||| ||| || ||| ||||| ||||||| |||| ||||||||||||||||  |  |||||||| ||| |||||||| ||||||| ||||    
T  2744060 actaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggacct 2743961  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    |  |||| |||||||||| |  |  |||||||||||||  |||||||    
T  2743960 tggttaagctagaagagacccgttccatctcatctaaatgctcttgg 2743914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 12958099 - 12958245
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||  ||||| ||| || ||| ||||| | ||||| |||| ||||||||||||||||| |  |||||||| ||  |||||||||||||||  ||||    
T  12958099 actaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatgacct 12958198  T
Q  103 tacttaaactagaagagatcta-tgtcatctcatctaaacactcttgg 149  Q
    |  |||| |||||||||| ||| |  |||||||||||| |||||||||    
T  12958199 tggttaagctagaagaga-ctagttccatctcatctaagcactcttgg 12958245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 8034151 - 8034220
Alignment:
Q  11 ttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaag 80  Q
    |||||||||| || ||| ||||| |||  ||||||| ||||||||||||||||||| ||||||| |||||    
T  8034151 ttcgagtattgtgggacccaaatggactgcaagctctccctaagagttttaacgttgttgcatgtctaag 8034220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 8878155 - 8878201
Alignment:
Q  49 cctaagagttttaacgttattgcatgcctaagactggattcaaaccc 95  Q
    |||||||||||||||||| ||||||||||||  |||||||| |||||    
T  8878155 cctaagagttttaacgttgttgcatgcctaaagctggattcgaaccc 8878201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 36994562 - 36994660
Alignment:
Q  51 taagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    |||||||||||||| |  |||||| | ||| |||||||| ||||||| |||||  |||||||||||||||  | || ||||| |||||| | |||||||    
T  36994562 taagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttggttaaactagaagagacatgtgccatcttatctaagcgctcttgg 36994660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 13468759 - 13468876
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    ||||||| |||||| ||| || ||||||||| | || ||  ||| | ||||||||||||||| |  | |||||| ||| |||||||| ||||||| ||||    
T  13468759 actaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggattcgaacccaggacct 13468858  T
Q  103 tacttaaactagaagaga 120  Q
    |  |||| ||||||||||    
T  13468859 tggttaagctagaagaga 13468876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 15683016 - 15682939
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||| ||||||||||||||||| |  |||||||| ||| |||||||| ||| ||| |||||  |||| ||||||||||    
T  15683016 gctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaagctagaagaga 15682939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 16701393 - 16701510
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||| |||| | || || ||||||||| | | |||| ||| ||||||||| ||||| | || || ||| | ||| |||||||| ||||||||||||    
T  16701393 actaatctctcgaatcttgtgggactcaaatgggctacaaactctccctaagaggtttaaagctactgtatgtccaaggctggattcgaacccagaacct 16701492  T
Q  103 tacttaaactagaagaga 120  Q
    || ||||  |||||||||    
T  16701493 tagttaagatagaagaga 16701510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 30936091 - 30936014
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||| |||||||||||||||||||  ||||||| |||| |||||||| ||| ||| |||||  ||||  |||||||||    
T  30936091 gctctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactcaggaccttggttaagttagaagaga 30936014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 19715777 - 19715853
Alignment:
Q  40 caagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaa 116  Q
    ||||||| |||| |||||||||||| |  |||||||| ||| |||||||| ||||||| |||||  |||| ||||||    
T  19715777 caagctctccctgagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaa 19715853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 46373800 - 46373664
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||| ||||| ||| |||||| ||||||| || ||||||| ||||| ||||||||||| | ||| ||||| |||||||||||| ||||||| | ||    
T  46373800 actaatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatct 46373701  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaa 139  Q
    | ||||| |||||||||| |   ||||||||||||||    
T  46373700 tgcttaagctagaagagacccgcgtcatctcatctaa 46373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 19477300 - 19477409
Alignment:
Q  40 caagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaa 139  Q
    ||||||| ||||||||||||||||  | ||||||||| ||| ||||||||||||||||||||||  |||| |||||||||| |  |  ||||||||||||    
T  19477300 caagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctagaagagacccgttccatctcatctaa 19477399  T
Q  140 acactcttgg 149  Q
    || |||||||    
T  19477400 acgctcttgg 19477409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 28537477 - 28537371
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaaca 142  Q
    |||| ||||||||||||||||||| ||||||||| ||| |||||||| |||||| ||||||  ||||  ||||||||| |  |  |||||||||||| |     
T  28537477 gctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaagcg 28537378  T
Q  143 ctcttgg 149  Q
    |||||||    
T  28537377 ctcttgg 28537371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 8839340 - 8839441
Alignment:
Q  48 ccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactctt 147  Q
    ||||||||||||||||| |  |||||||| ||| |||||||| ||||||| |||||  |||| |||||||||| |  | ||||||||||||| | |||||    
T  8839340 ccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctctt 8839439  T
Q  148 gg 149  Q
    ||    
T  8839440 gg 8839441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 20207587 - 20207480
Alignment:
Q  40 caagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaa 139  Q
    ||||||| || |||||||||||||||| || |||||||||| ||| |||  |||||| || |||| |||| |||||||| ||| || |||||||||||||    
T  20207587 caagctctccttaagagttttaacgttgttacatgcctaaggctgaattagaaccca-aatcttagttaagctagaagaaatccatatcatctcatctaa 20207489  T
Q  140 acactcttg 148  Q
     | ||||||    
T  20207488 gcgctcttg 20207480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 27484101 - 27484201
Alignment:
Q  41 aagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaa 140  Q
    |||||| ||| ||||||||||||| |  |||||||| | | ||||||| |||| ||| |||||  |||| ||||||||||  | ||||||||||||||||    
T  27484101 aagctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagacttgtgtcatctcatctaaa 27484200  T
Q  141 c 141  Q
    |    
T  27484201 c 27484201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 2871038 - 2871089
Alignment:
Q  52 aagagttttaacgttattgcatgcctaagactggattcaaacccagaacctt 103  Q
    |||||||||||| || ||||||| |||||  |||||||||||||||||||||    
T  2871038 aagagttttaacattgttgcatgtctaaggatggattcaaacccagaacctt 2871089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 40212034 - 40211995
Alignment:
Q  49 cctaagagttttaacgttattgcatgcctaagactggatt 88  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  40212034 cctaagagttttaacgttgttgcatgcccaagactggatt 40211995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 7190439 - 7190521
Alignment:
Q  69 tgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttggat 151  Q
    |||||||| ||  ||| |||||||| || ||||||  |||| ||||||||||| |||  |||||||||||||| |||||||||    
T  7190439 tgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacgctcttggat 7190521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 7265327 - 7265473
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    ||||||| |||||||||| || ||| |||||   |  ||| ||| |||||||||||||||| |   |||||||| |||||| ||| | |||||| ||| |    
T  7265327 actaatcattcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactt 7265426  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    |  |||| |||||||||| |  ||||||||||| ||||| |||||||    
T  7265427 tggttaagctagaagagacccgtgtcatctcatataaacgctcttgg 7265473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 13254155 - 13254261
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaaca 142  Q
    |||| |||||||||||| |||| |  |||||||||||| |||||||| ||| ||| |||||  |||| |||||||||| |  |  |||||||||||| |     
T  13254155 gctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctagaagagacccgttccatctcatctaagcg 13254254  T
Q  143 ctcttgg 149  Q
    |||||||    
T  13254255 ctcttgg 13254261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 23731323 - 23731208
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||||||||||||| |||||| |||||  |||||||| ||  ||||| |||||||| ||| |||||| |||||  ||| |||| ||  |||| |||    
T  23731323 actaatctttcgagtattgtgtgac-caaatgaacgacaagttcttcctaaaagttttaatgttgttgcatacctaatgctgaattcgaa-tcagagcct 23731226  T
Q  103 tacttaaactagaagaga 120  Q
    || ||||| |||||||||    
T  23731225 tagttaaattagaagaga 23731208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 29059892 - 29059815
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||| ||||||||||||||||  |  |||||||| ||| |||||||| ||||||| |||||  |||| ||||||||||    
T  29059892 gctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 29059815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 31492190 - 31492113
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||| ||||||||||||||||  |  |||||||| ||| |||||||| ||||||| |||||  |||| ||||||||||    
T  31492190 gctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 31492113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 4059707 - 4059854
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||  |||||| || |||||| |||||| |||  || ||| | ||||||||||||||| | ||||||||  ||| ||| |||| ||| ||| ||||    
T  4059707 actaatccctcgagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattcgaactcag-acct 4059805  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaaacactcttggat 151  Q
    |  |||||||| ||||||  | |||||| |||||||| ||||| |||||    
T  4059806 tggttaaactaaaagagacatgtgtcatgtcatctaagcactcatggat 4059854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 45994649 - 45994503
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||| ||||| ||| || ||| ||||| | || || |||| ||||||||||||||||||| ||||||||| ||| |||||||| || |||| ||||    
T  45994649 actaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatccaggacct 45994550  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    |  |||| |||||||||| || |  |||||||||||||| |||||||    
T  45994549 tggttaagctagaagagacctgttccatctcatctaaacgctcttgg 45994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 14854695 - 14854586
Alignment:
Q  40 caagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaa 139  Q
    ||||||| ||||||||||||||||| |  |||||||| ||| |||||||| |||||||||||||  |||| |||||||||| |  |  ||||||||||||    
T  14854695 caagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccatctcatctaa 14854596  T
Q  140 acactcttgg 149  Q
     | |||||||    
T  14854595 gcgctcttgg 14854586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 47023529 - 47023444
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggatt 88  Q
    ||||||| ||||||| || || ||| ||||| |||||||| ||| |||||||||||||||| || ||||||||||||| |||||||    
T  47023529 actaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggatt 47023444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 7096185 - 7096087
Alignment:
Q  41 aagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaa 139  Q
    |||||| |||||||||||||||| ||  ||||| |  ||||||| ||||||||||| ||||||  |||| |||||||| | || |||||||||||||||    
T  7096185 aagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagctagaagaaacctgtgtcatctcatctaa 7096087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 38766171 - 38766099
Alignment:
Q  48 ccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    ||||||||||||||||| |  |||||||| ||| |||||||||||||||| |||||  |||| ||||||||||    
T  38766171 ccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccaggaccttggttaagctagaagaga 38766099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 39097106 - 39097203
Alignment:
Q  51 taagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    |||||||||||| | || |||||| |||||||| ||||||||| ||| |||||| |||||||| ||||||    |||||||| ||| ||||||||||||    
T  39097106 taagagttttaa-gctaatgcatgtctaagactagattcaaacacaggaccttagttaaactaaaagagactcgtgtcatcttatccaaacactcttgg 39097203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 4710019 - 4710111
Alignment:
Q  50 ctaagagttttaacgttattgcatgcctaagactgga-ttcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaac 141  Q
    ||||||||||||||||| ||||||||||||  || || ||| |||||| ||||||  |||||| | |||||||  | ||||||||||||||||    
T  4710019 ctaagagttttaacgttgttgcatgcctaatgctagatttcgaacccaaaaccttgattaaacaaaaagagatacacgtcatctcatctaaac 4710111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 5974006 - 5974069
Alignment:
Q  85 gattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttg 148  Q
    ||||| ||| ||||||| || |||||||||||||||  |||||||||| |||||||| ||||||    
T  5974006 gattcgaacacagaaccgtagttaaactagaagagacatatgtcatcttatctaaacgctcttg 5974069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 31307120 - 31307197
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||| ||||||||||||||||  |  |||||||| ||| |||||||| ||||||| |||||  |||| ||||||||||    
T  31307120 gctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 31307197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 3649105 - 3649145
Alignment:
Q  48 ccctaagagttttaacgttattgcatgcctaagactggatt 88  Q
    ||||||||||||||||||| ||||||||| |||||| ||||    
T  3649105 ccctaagagttttaacgttgttgcatgcccaagactagatt 3649145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 36982447 - 36982338
Alignment:
Q  38 gacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatct 137  Q
    ||||| ||| ||||||||||||||||||| ||||||| ||||| ||| |||| |||||   |||||  ||||||||||||||| || |||||||||||||    
T  36982447 gacaaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatct 36982348  T
Q  138 aaacactctt 147  Q
    |||| |||||    
T  36982347 aaactctctt 36982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 16756209 - 16756063
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||  ||||| ||| || ||| |||||  |||||| |||| ||||||||||||||||| |  |||||||| ||  ||| |||||||||||||||||    
T  16756209 actaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgcccaatgctgaattcaaacccagaacct 16756110  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    |  |||| ||||||||||||  |  |||||||||||| | |||||||    
T  16756109 tggttaagctagaagagatccgttccatctcatctaagcgctcttgg 16756063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 22022202 - 22022101
Alignment:
Q  48 ccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactctt 147  Q
    ||||||||||||||| | |  |||||||| ||| |||||||| |||||| ||||||| |||| |||||||||| || |  |||||||||||||| |||||    
T  22022202 ccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctcatctaaacgctctt 22022103  T
Q  148 gg 149  Q
    ||    
T  22022102 gg 22022101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 24801508 - 24801372
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||| | |||| || || ||||||||| ||||  || ||| ||||||||||||||||  |  |||||||||||| |||||||| |||| || || |    
T  24801508 actaatctcttgagtcttgtgggactcaaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaaccaaggactt 24801409  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaa 139  Q
    || |||| ||| |||| |||  |||||||||||||||    
T  24801408 tagttaatctataagaaatccgtgtcatctcatctaa 24801372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 35540041 - 35540144
Alignment:
Q  50 ctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    ||||||||||||||||| ||||||||  ||| ||| ||||| || |||||||||  |||| ||| |||| || ||| |||||||||| ||| ||| ||||    
T  35540041 ctaagagttttaacgttgttgcatgcacaaggctgaattcagactcagaaccttgattaagctaaaagaaatttatttcatctcatccaaatacttttgg 35540140  T
Q  150 atta 153  Q
    ||||    
T  35540141 atta 35540144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 10648573 - 10648483
Alignment:
Q  51 taagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaac 141  Q
    |||||||||||||||||||| |||   ||||||| ||||| ||||| || |||| ||||| ||||||| | | ||| ||||||||||||||    
T  10648573 taagagttttaacgttattgtatgttcaagactgaattcatacccaaaaacttaattaaattagaagaaaccaatgacatctcatctaaac 10648483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 36086936 - 36086837
Alignment:
Q  51 taagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga-tctatgtcatctcatctaaacactcttgg 149  Q
    ||||||||||||| |  ||||||||  |||||||||||| ||| ||| |||||  |||||||| |||||| ||| ||||||||||||||||| || ||||    
T  36086936 taagagttttaacatggttgcatgcgcaagactggattcgaactcaggacctttgttaaactaaaagagactct-tgtcatctcatctaaacgcttttgg 36086838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 28506325 - 28506279
Alignment:
Q  94 ccagaaccttacttaaactagaagagatctatgtcatctcatctaaa 140  Q
    ||||||||||| ||||||||||||||| || |||||| |||||||||    
T  28506325 ccagaaccttagttaaactagaagagacctgtgtcatttcatctaaa 28506279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 36522258 - 36522336
Alignment:
Q  11 ttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattc 89  Q
    |||||| ||| || ||||||||| |||| ||| ||| |||||||||||||||| ||  |||||| ||||||||| ||||    
T  36522258 ttcgagcattgtgggactcaaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattc 36522336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 38465760 - 38465798
Alignment:
Q  82 ctggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  38465760 ctggattcgaacccagaaccttagttaaactagaagaga 38465798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 17600561 - 17600650
Alignment:
Q  52 aagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaac 141  Q
    ||||||||||||| | ||||||||  ||| ||| |||| ||||||  |||||  |||| |||||||||| |  |||||||||||||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaac 17600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 31733737 - 31733849
Alignment:
Q  35 gacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctca 134  Q
    |||||||| ||| ||||||||||||||||  |  |||||||||||  ||| |||| |||||| ||| ||  ||||  ||||||| |  | ||| ||||||    
T  31733737 gacgacaaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctca 31733836  T
Q  135 tctaaacactctt 147  Q
    |||||||||||||    
T  31733837 tctaaacactctt 31733849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 17457107 - 17457225
Alignment:
Q  30 aaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtca 129  Q
    |||||| ||||||||||  ||||| ||||||||||||  |||||||| ||||||| |||||||| || ||| ||  ||||  || ||||||||| |||||    
T  17457107 aaataggcgacaagctcttcctaaaagttttaacgttgatgcatgccgaagactgaattcaaactcataactttggttaagttaaaagagatctgtgtca 17457206  T
Q  130 tctcatctaaacactcttg 148  Q
    |||||||||| ||||||||    
T  17457207 tctcatctaagcactcttg 17457225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 31107507 - 31107655
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||| |||| |||| || || |||||| ||||  |||||| ||| ||||||||||||| | ||||||| | ||  |||||||| ||| ||||||||    
T  31107507 actaatctctcgaatattgtgggaatcaaatggacggtaagctctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaacct 31107606  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaaacactcttggat 151  Q
    || ||||  ||||||||| | || ||||||||||||||| || ||||||    
T  31107607 tagttaagttagaagagacccatttcatctcatctaaacgctattggat 31107655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 423735 - 423637
Alignment:
Q  50 ctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttg 148  Q
    ||||||||||||||| |   ||||||| ||| ||||||||||||||| ||||||  |||||||||||||||||| |  |||||||||||| | ||||||    
T  423735 ctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttggttaaactagaagagatctgttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 21910285 - 21910186
Alignment:
Q  50 ctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttgg 149  Q
    ||||||||||||||| | ||||||||| ||| |||||||| ||||||| | |||  |||| ||||||||||  | | ||||||||||||||| |||||||    
T  21910285 ctaagagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaacgctcttgg 21910186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 29185375 - 29185307
Alignment:
Q  48 ccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaa 116  Q
    |||||||||||||||||||  |||||| ||||  |||||||| |||| ||||||||| |||||||||||    
T  29185375 ccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaaactagaa 29185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 12836950 - 12837007
Alignment:
Q  42 agctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaa 99  Q
    ||||| ||||||||||||||||| |  |||||||||||| |||||||| |||||||||    
T  12836950 agctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaacccagaa 12837007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 31489623 - 31489506
Alignment:
Q  22 tgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagat 121  Q
    ||||||||||||| |||  || ||| |||||| ||||||||||||  ||||| || ||  ||| ||||||||||||||||||  |||| ||| || ||||    
T  31489623 tgtgactcaaataaacggaaaactctccctaaaagttttaacgttgctgcatacccaaagctgtattcaaacccagaaccttgattaagctaaaaaagat 31489524  T
Q  122 ctatgtcatctcatctaa 139  Q
     | |||||||| ||||||    
T  31489523 ttgtgtcatcttatctaa 31489506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 25084161 - 25084025
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||| ||||| ||| ||  ||| |||| || ||||||||| |||||||||||||||| ||  |||||| | ||||||| |||| ||| ||  || |    
T  25084161 actaatctctcgagcattgtggaacttaaatggatgacaagctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactt 25084062  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaa 139  Q
    |  |||| ||||||||||  | |||||||||||||||    
T  25084061 tgattaagctagaagagacttgtgtcatctcatctaa 25084025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 278491 - 278374
Alignment:
Q  30 aaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtca 129  Q
    |||| |||| ||| ||| || |||||||||||| ||  ||||||||| ||  |||||||||||| ||  |||||| |||| ||||||||||    |||||    
T  278491 aaatggacggcaaactctccataagagttttaatgtg-ttgcatgcccaaagctggattcaaactcaagaccttagttaagctagaagagactcgtgtca 278393  T
Q  130 tctcatctaaacactcttg 148  Q
    |||||||||||| ||||||    
T  278392 tctcatctaaacgctcttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 8507140 - 8507202
Alignment:
Q  86 attcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactcttg 148  Q
    |||| |||||| ||||||| |||| |||||||| |||  ||||||||||||||||| ||||||    
T  8507140 attcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaacgctcttg 8507202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 12411229 - 12411131
Alignment:
Q  49 cctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaacactctt 147  Q
    |||||||||||||||| |  |||||||| ||| |||||||| ||| ||| |||||  ||||  ||||||||| || |  |||||||||||| |||||||    
T  12411229 cctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaagcactctt 12411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 48204351 - 48204471
Alignment:
Q  29 caaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtc 128  Q
    ||||| |||||||||||| ||||||| |||||||||||  |||||||| ||| |||||||| ||||||  |||||  |||| ||||||||||    |  |    
T  48204351 caaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttcc 48204450  T
Q  129 atctcatctaaacactcttgg 149  Q
    ||||||||||| |||||||||    
T  48204451 atctcatctaagcactcttgg 48204471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 22288351 - 22288226
Alignment:
Q  14 gagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaacta 113  Q
    ||||||| ||| |||||||| ||||||||| || |||||||||||||||| || |||||||   ||| ||| |||| ||| ||| || ||  ||||  ||    
T  22288351 gagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatgttcaaggctgaattcgaactcaggactttggttaagtta 22288252  T
Q  114 gaagagatctatgtcatctcatctaa 139  Q
    ||||||||  ||||||||||||||||    
T  22288251 gaagagattcatgtcatctcatctaa 22288226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 38088736 - 38088616
Alignment:
Q  29 caaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtc 128  Q
    ||||||| || |||| || ||||||||||||||||| || |||||||| ||  |||||||| ||||  |||||||  |||| |||||||||| |  | ||    
T  38088736 caaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgtttc 38088637  T
Q  129 atctcatctaaacactcttgg 149  Q
    ||||||||||| | |||||||    
T  38088636 atctcatctaagcgctcttgg 38088616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 40294739 - 40294594
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    ||||||| |||||||||| || || ||||||   || ||||||  |||||||||||||||| || ||||||  | ||| |||||||| ||| ||| ||||    
T  40294739 actaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaaggctggattcgaactcaggacct 40294640  T
Q  103 tacttaaactagaagagatctatgtcatctcatctaaacactcttg 148  Q
    |  ||||  |||| ||||    ||||||||||||||||||||||||    
T  40294639 tgattaaggtagaggagactcgtgtcatctcatctaaacactcttg 40294594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 48210983 - 48211091
Alignment:
Q  12 tcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaac 111  Q
    ||||||||| || |||  ||||||||| ||||||| || ||||||||||||||||  |||||||  ||| |||||||| |||| | ||||||  ||||      
T  48210983 tcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgcatgctcaaggctggattcgaaccaaaaaccttgattaagt 48211082  T
Q  112 tagaagaga 120  Q
    |||||||||    
T  48211083 tagaagaga 48211091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 54877913 - 54877824
Alignment:
Q  50 ctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaa 139  Q
    ||||||||||||||||| ||| ||||| ||| ||| |||||||| || ||||||  ||||  ||||||||| | ||||||  ||||||||    
T  54877913 ctaagagttttaacgttgttggatgcccaaggctgaattcaaactcaaaaccttggttaagttagaagagacccatgtcaaatcatctaa 54877824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 27763848 - 27763748
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||  ||||| ||| || ||||||||| |||| ||  ||| ||||||||||||||||  | ||| ||||| ||| |||||||| ||||||| ||||    
T  27763848 actaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgcccaaggctggattcgaacccaggacct 27763749  T
Q  103 t 103  Q
    |    
T  27763748 t 27763748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 12682729 - 12682645
Alignment:
Q  36 acgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||||||| || ||| ||||||||||||||| ||||||||  ||| |||||||| ||| |||||| || ||||| ||||||||||    
T  12682729 acgacaagttctcccgaagagttttaacgttgttgcatgctcaaggctggattcgaactcagaacattgcttaagctagaagaga 12682645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 3525895 - 3526003
Alignment:
Q  30 aaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtca 129  Q
    |||||| || ||| ||| |||||| |||||||||  | ||||||| |||||| ||||||| |||  |||| |||  |||||||||||||||  | |||||    
T  3525895 aaataggcggcaaactctccctaaaagttttaacaatgttgcatgtctaagagtggattcgaact-agaatcttggttaaactagaagagacatgtgtca 3525993  T
Q  130 tctcatctaa 139  Q
    ||||||||||    
T  3525994 tctcatctaa 3526003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 10592054 - 10591937
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaacct 102  Q
    |||||||  ||||| ||| || ||||||||| | || ||  ||| ||||||||||||||||  |  |||||||| ||| |||||||| ||||||| ||||    
T  10592054 actaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggacct 10591955  T
Q  103 tacttaaactagaagaga 120  Q
    |  |||| ||||||||||    
T  10591954 tggttaatctagaagaga 10591937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 33757070 - 33756968
Alignment:
Q  37 cgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatc 136  Q
    ||||||||||  |||||||||||||||| ||||| ||||  ||| ||| |||| |||  ||||||||  |||| |||||||||| |  ||||||||||||    
T  33757070 cgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaaccttgattaagctagaagagacccgtgtcatctcatc 33756971  T
Q  137 taa 139  Q
    |||    
T  33756970 taa 33756968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 38464082 - 38463996
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattc 89  Q
    |||||||  ||||||||| || ||||||||||||||   ||||||| | ||||||||||||| | ||||||||| ||| ||||||||    
T  38464082 actaatcactcgagtattgtgggactcaaatagacggttagctccctccaagagttttaacggtgttgcatgcccaaggctggattc 38463996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 17981624 - 17981540
Alignment:
Q  3 actaatctttcgagtattatgtgactcaaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggatt 88  Q
    |||||||| ||||| ||| || ||| ||||| | || ||||||| ||||||||||||||| ||| ||||||||| |||||||||||    
T  17981624 actaatctctcgagcattgtgggacccaaattg-cggcaagctctccctaagagttttaatgttgttgcatgcccaagactggatt 17981540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 12133270 - 12133361
Alignment:
Q  29 caaatagacgacaagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    ||||| |||| || |||| |||||||||||||||||||  |||||| | ||| |||||||| ||||||  |||||  |||| ||||||||||    
T  12133270 caaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagaga 12133361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 44752245 - 44752344
Alignment:
Q  40 caagctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaa 139  Q
    ||||||| ||| ||||||||||||||| ||||||||| |||||| ||||| |||| || |  ||  |||| ||||||||||  | | |||||||||||||    
T  44752245 caagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctaggagtttggttaagctagaagagacttgtatcatctcatctaa 44752344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 37568786 - 37568856
Alignment:
Q  48 ccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaaga 118  Q
    ||||||||||||||||  |  |||||||||||| |||||||| ||||||| |||||  |||| ||||||||    
T  37568786 ccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaaga 37568856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 37155 - 37219
Alignment:
Q  77 taagactggattcaaacccagaaccttacttaaactagaagagatctatgtcatctcatctaaac 141  Q
    ||||||||||||||||||||  || ||| ||||| |||||||||| | |||| ||||||||||||    
T  37155 taagactggattcaaacccacgactttagttaaattagaagagatatgtgtcgtctcatctaaac 37219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 26418 - 26341
Alignment:
Q  43 gctccccctaagagttttaacgttattgcatgcctaagactggattcaaacccagaaccttacttaaactagaagaga 120  Q
    |||| ||||||||||||||||  |  |||||||| ||| |||||||| ||||||| |||||  |||| ||||||||||    
T  26418 gctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagaga 26341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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