View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_7 (Length: 481)
Name: NF5897_high_7
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 38015716 - 38015412
Alignment:
| Q |
18 |
gagtttacttctacaatttctgagagtgacacctagaaccgagaaagcagttttggtagcacaaatttgatggatgtagttatgagatcaatgtaagatc |
117 |
Q |
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| T |
38015716 |
gagtttacttctacaattgctgagagtaac--ctagaaccgagaaagcagtgttggtagcacaaatttgatggatgtagttatga--------------c |
38015633 |
T |
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| Q |
118 |
atcttttatagtctactttttatacttgatggttgaaaattgaaacaacatgtaagatgttactaattctgatacttttattttgttnnnnnnnnntctt |
217 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38015632 |
atcttttattatctactttttatacctgatggttgaaaattgaaacaacatgtaagatgttactaattctgatacttttattttgttaaaaaaaaatctt |
38015533 |
T |
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| Q |
218 |
aatacttttatactcaaatttgtgttgatggtattctttttgcttcttgctctttacatcagtggcggttcaacactaaaaactttgtttgcttttcgta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38015532 |
aatacttttatactcaaatttgtgttgatggtattctttttgctttttgctgtttacatcagtggcggttcaacactagaaactttgtttgcttttcgta |
38015433 |
T |
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| Q |
318 |
tttacaaacttcgttttcatg |
338 |
Q |
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| T |
38015432 |
tttacaaacttcgttttcatg |
38015412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 219 - 338
Target Start/End: Original strand, 26496685 - 26496797
Alignment:
| Q |
219 |
atacttttatactcaaatttgtgttgatggtattctttttgcttcttgctctttacatcagtggcggttcaacactaaaaactttgtttgcttttcgtat |
318 |
Q |
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|||||| | |||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||| |||||| |||| |||||||||| |
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| T |
26496685 |
atacttctttactcaaatttgtgttaatggtattcttttttatt-------tttacatccgtggcggttcaacactagaaacttagtttacttttcgtat |
26496777 |
T |
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| Q |
319 |
ttacaaacttcgttttcatg |
338 |
Q |
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|||||||||||| ||||||| |
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| T |
26496778 |
ttacaaacttcggtttcatg |
26496797 |
T |
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