View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_high_8 (Length: 451)
Name: NF5897_high_8
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 259 - 433
Target Start/End: Complemental strand, 1106954 - 1106780
Alignment:
| Q |
259 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttcttgcacgttcattccgctatggaagtgtctgtccatcattgat |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1106954 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttcttccacgttcattccgctatggaagtgtctgtccatcattgat |
1106855 |
T |
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| Q |
359 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtat |
433 |
Q |
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| T |
1106854 |
agtgaaaaataagaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtat |
1106780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 259 - 433
Target Start/End: Complemental strand, 3736125 - 3735951
Alignment:
| Q |
259 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttcttgcacgttcattccgctatggaagtgtctgtccatcattgat |
358 |
Q |
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||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||| |
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| T |
3736125 |
cacaaccaaccttgatctgatttccgcaatgcacttatcaacaagatcaattgcttcttccacagacattccactatggtagtgtctgtccatcattgat |
3736026 |
T |
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| Q |
359 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtat |
433 |
Q |
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| T |
3736025 |
agtgaaaaataggaaccataaccaaaagcacccttttcaagcttgtgaagtgttgcaatgtagtcaatatagtat |
3735951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 259 - 433
Target Start/End: Original strand, 22981573 - 22981747
Alignment:
| Q |
259 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttcttgcacgttcattccgctatggaagtgtctgtccatcattgat |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |
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| T |
22981573 |
cacaaccaaccttgatcggatttccaaaatgcacttgtcaacaagatcaattgcttcttccacgttcattccgctatggaagtgtttgtccatcattaat |
22981672 |
T |
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| Q |
359 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtat |
433 |
Q |
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| T |
22981673 |
agtgaaaaataggaaccataaccaaaagctcccttttcaagcttgtgaagtgtcgcaatgtagtcgatgtagtat |
22981747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 22842773 - 22842862
Alignment:
| Q |
72 |
caaagagaaaaactttgaaccctaa---cgacttctaagacaagcatcgat--agttgtttcaactttgaatccaactcatatgtttagc |
156 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||| || ||| |||||||||||||||| | ||||||||||||| |
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| T |
22842773 |
caaagagaaaaactttgaaccctaatattgacttctaagacatgcatcaatcgagtggtttcaactttgaatcttattcatatgtttagc |
22842862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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