View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_10 (Length: 425)
Name: NF5897_low_10
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 11815079 - 11815288
Alignment:
| Q |
16 |
atatataattaataaggtctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagtactttaattgcaataacta |
115 |
Q |
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| T |
11815079 |
atatataattaataaggtctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagtactttaattgcaataacta |
11815178 |
T |
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| Q |
116 |
tccagtacttcagatctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggattcactatctcaagc |
215 |
Q |
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| T |
11815179 |
tccagtacttcagatctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattctggattcactatctcaagc |
11815278 |
T |
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| Q |
216 |
ctgtacaaaa |
225 |
Q |
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|||||||||| |
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| T |
11815279 |
ctgtacaaaa |
11815288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 11826067 - 11826176
Alignment:
| Q |
131 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggattcactatctcaagcctgtacaaaatagat |
230 |
Q |
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| T |
11826067 |
ctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatctggatttactcgatcaagcctacacgaaatagat |
11826166 |
T |
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| Q |
231 |
gaattagtaa |
240 |
Q |
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| T |
11826167 |
aaattagtaa |
11826176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 11815285 - 11815347
Alignment:
| Q |
244 |
aaaaattgagcttgatttcaaactaattaattcttttctatgaaattaatttaacagcaaaagttaa |
310 |
Q |
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| T |
11815285 |
aaaaattgagcttgatttcaaactaatt----cctttctatgaaattaatttaacagcaaaaattaa |
11815347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 11799285 - 11799356
Alignment:
| Q |
131 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggatt |
202 |
Q |
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| T |
11799285 |
ctttatcaccttggaaaggcaattgtctataggcttggataatggtaagcaagtaatagggcattctggatt |
11799356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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