View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_15 (Length: 375)
Name: NF5897_low_15
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 32597945 - 32597587
Alignment:
| Q |
1 |
aagagacaaattctaccacttaccttctttcttctattcctctgaattcgtttttcttagtttaagatacatattcaacttatgaggagcacgcaaccac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| |
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| T |
32597945 |
aagagacaaattctaccacttaccttctttcttctattcctctgaattcgtttttcttagtgtaagatacatattcaactgatgaggagcatgcaaccac |
32597846 |
T |
|
| Q |
101 |
taggaatgaatttggaagattgcgaaacctttttctgtcagctaacttctttcttttatttcctatgaatttgtttttcctaaaaaacatggatc-tttt |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32597845 |
taggaatgaatttggaagattgtgaaacctttttctgtcagctaacttctttcttttatttcctatgaatttgtttttcctaaaaaacatggatcttttt |
32597746 |
T |
|
| Q |
200 |
attttctgattgtttcattcttgcaaatttgcaccaaagctttagtagattctgcataaaagagaacaaatgcagaattgagcaatgatttatgtataga |
299 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32597745 |
atttcctgattgtttcattcttgcagatttgcaccaaagctttagtagattctgcataaaagagaacaaatgcagaattgagcaatgatttatgtataga |
32597646 |
T |
|
| Q |
300 |
atggataggaaaaataatatagtctaacctcaatataggaccttagatactgaccaaaata |
360 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32597645 |
atggataggaaaaata--atagtctaacctcaatataggaccttagatactgaccaaaata |
32597587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32598143 - 32598064
Alignment:
| Q |
1 |
aagagacaaattctaccacttaccttctttcttctattcctctgaattcgtttttcttagtttaagatacatattcaact |
80 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32598143 |
aagagacaaattctaccacttaccttctttcttctattcctctgaattcgtttttcttagtgtaagatacatattcaact |
32598064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 32614045 - 32613933
Alignment:
| Q |
201 |
ttttctgattgtttcattcttgcaaatttgcaccaaagctttagtagattctgcataaaagagaacaaatgcagaattgagcaatgatttatgtatagaa |
300 |
Q |
| |
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||||||| | |||||||||||||| ||||||| |||||| |||| |||| |||||||||| ||||||||||| |||||||||| ||||||||| ||| |
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| T |
32614045 |
ttttctgctagtttcattcttgcagatttgcagcaaagccttag---attcggcataaaaga--acaaatgcagatttgagcaatgttttatgtatggaa |
32613951 |
T |
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| Q |
301 |
tggataggaaaaataata |
318 |
Q |
| |
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|| ||||||||||||||| |
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| T |
32613950 |
tgaataggaaaaataata |
32613933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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