View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_16 (Length: 373)
Name: NF5897_low_16
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_16 |
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| [»] scaffold0528 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 31052743 - 31052397
Alignment:
| Q |
20 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgttatagttaagtgagtcttcatattcaatattataataaaagactct |
119 |
Q |
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| T |
31052743 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgttatagttaagtgagtcttcatattcaatattataataaaagactct |
31052644 |
T |
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| Q |
120 |
aatctggtattatatgttcaaagaaataaaattcatcttgctgtattaactattcctttgtagttcaggggagtggtaaataggatgattttgatctgat |
219 |
Q |
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| T |
31052643 |
aatgtggtattatatgttcaaagaaataaaattcatcttgctgtattaactattcctttgtagttcaggggagtggtaaataggatgattttgatctgat |
31052544 |
T |
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| Q |
220 |
atgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacatttaggttatatcctataaatagtttttcactcagtcgatgaccatgttctaca |
319 |
Q |
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| T |
31052543 |
atgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacattaaggttttatcctataaatagtttttcactcagtcgatgaccatgttctaca |
31052444 |
T |
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| Q |
320 |
aatgatgtgttgattttgaatgttatttttcaaagtagttccctttg |
366 |
Q |
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| T |
31052443 |
aatgatgtgttgattttgaatgttatttttcaaagtagttccctttg |
31052397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 193 - 362
Target Start/End: Complemental strand, 31034222 - 31034059
Alignment:
| Q |
193 |
tggtaaataggatgattttgatctgatatgtcatgttgtaagaagtctgagagtcgagaaatggtgaagaacatttaggttatatcctataaatagtttt |
292 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
31034222 |
tggtaaataggatgagtttgatctgatatgtcgtgttgtaagaagtctgagagtcgagaaatg---aagaacattaaggttttatcctatacatagtttt |
31034126 |
T |
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| Q |
293 |
tcactcagtcgatgaccatgttctacaaatgatgtgttgattttgaatgttatttttcaaagtagttccc |
362 |
Q |
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|||||| || ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
31034125 |
tcactcggttgatgacctagttctacaaatgatgtgttgattttgaatg---ttttacaaagtagttccc |
31034059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 31039126 - 31039034
Alignment:
| Q |
73 |
ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat |
165 |
Q |
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| T |
31039126 |
ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat |
31039034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 31039253 - 31039197
Alignment:
| Q |
20 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgttat |
76 |
Q |
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| T |
31039253 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaacttgcatgttat |
31039197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 31048349 - 31048257
Alignment:
| Q |
73 |
ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat |
165 |
Q |
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| T |
31048349 |
ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat |
31048257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 31048476 - 31048420
Alignment:
| Q |
20 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgttat |
76 |
Q |
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| T |
31048476 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaacttgcatgttat |
31048420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 31034250 - 31034219
Alignment:
| Q |
226 |
tgttgtaagaagtctgagagtcgagaaatggt |
257 |
Q |
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| T |
31034250 |
tgttgtaagaagtctgagagtcgagaaatggt |
31034219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 31071447 - 31071414
Alignment:
| Q |
126 |
gtattatatgttcaaagaaataaaattcatcttg |
159 |
Q |
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| T |
31071447 |
gtattatatgttcaaagatataaaattcatcttg |
31071414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 83 - 139
Alignment:
| Q |
20 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaaattgcatgttat |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
83 |
tctgtcttgttgctaagaagcgaattgaatgcgtgtgatcttgaacttgcatgttat |
139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 210 - 302
Alignment:
| Q |
73 |
ttatagttaagtgagtcttcatattcaatattataataaaagactctaatctggtattatatgttcaaagaaataaaattcatcttgctgtat |
165 |
Q |
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|||||||||||||||||||||| | |||||| ||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||||| |
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| T |
210 |
ttatagttaagtgagtcttcatgattaatattgtaataaaagactctatccttgtattatatgttcatagaaataaaaatcatctttctgtat |
302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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