View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_18 (Length: 330)
Name: NF5897_low_18
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 269675 - 269354
Alignment:
| Q |
1 |
atatgaaacctcaataatgtgatggtatgtatgcataagaaaatcttcatttaattgaattaaatcagaaatctagtttccatttggttagcatttttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
269675 |
atatgaaacctcaataatgtgatggtatgtatgcataagaaaatcttcatttagttgaattaaatcagaaatctagtttccatttggttagcatttttaa |
269576 |
T |
|
| Q |
101 |
ttctatttctcaaatctttaacgatttgtgaaccatctggtgtaacatcctttaggagtacctatatcttgcttgcttatgtggttccaattttctctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
269575 |
ttctatttctcaaatctttaacgatttgtgaaccatctggtgtaacatcctttaggagtacctatatcttgcttgcttatttggttccaattatctctca |
269476 |
T |
|
| Q |
201 |
aatatccatctctcagcttaacattaaggtgattatcttattccgacattcccctacaccatatgcaatctaactccttaac--atcccgaataactcta |
298 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
269475 |
aatatccatctctcagcttaacattaaagtgattatcttattccgacattcccctacaccatatgcaatctaactccttaacatatcacgaataactcta |
269376 |
T |
|
| Q |
299 |
ctcttggaaaggttcacctttg |
320 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
269375 |
ctcttggaaaggttcacctttg |
269354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 29274438 - 29274350
Alignment:
| Q |
229 |
gtgattatcttattccgacattcccctacaccatatgcaatctaactccttaacatcccgaataactctactcttggaaaggttcacct |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
29274438 |
gtgagtatcttattccgacattcccctacaccatatgcaatctaactccttaacatcacgaataactctactcttgaaaaggttcacct |
29274350 |
T |
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