View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_19 (Length: 320)
Name: NF5897_low_19
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_19 |
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| [»] scaffold0458 (2 HSPs) |
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Alignment Details
Target: scaffold0458 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 292
Target Start/End: Complemental strand, 9893 - 9729
Alignment:
| Q |
128 |
attcactcttaactcgcttcaaacacgcttaaagcgagattcagcaagatcaatggataaggtccacgtggcagtctttcagtggccagagtgggattct |
227 |
Q |
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|||| |||| ||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
9893 |
attcgctctcaactcgcttcaaacacgtttatagcgagattcaacaaggtcaatggataaggtccacgtggcagtctttcaatggcaagagtgggattct |
9794 |
T |
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| Q |
228 |
ttggcaactcgcttaagcgacttcagctcacttgaagcgagtttgcccgaactcagcccatataa |
292 |
Q |
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| T |
9793 |
ttggcaacccgtttaagcgacttcagctcacttgaaatgagtttgcctgaacttagcctatataa |
9729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 11989 - 11909
Alignment:
| Q |
18 |
aaggacatgattgacttcagcaatggattcagtttatggcccgtgtttatgtttgcatgatgcctttgtataattttcatt |
98 |
Q |
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| T |
11989 |
aaggacatgattgacttcagcaatggattcagtttatggcccgtgtttatgtttgcatgatgcctttgtataaatttcatt |
11909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 292
Target Start/End: Original strand, 39453781 - 39453945
Alignment:
| Q |
128 |
attcactcttaactcgcttcaaacacgcttaaagcgagattcagcaagatcaatggataaggtccacgtggcagtctttcagtggccagagtgggattct |
227 |
Q |
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| T |
39453781 |
attcgctctcaactcgctccaaacacgtttaaagcgagattcaacaaggtcaatggataaggtccacgtggcagtctttcaatggcaagagtgggattct |
39453880 |
T |
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| Q |
228 |
ttggcaactcgcttaagcgacttcagctcacttgaagcgagtttgcccgaactcagcccatataa |
292 |
Q |
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| T |
39453881 |
ttggcaacccgtttaagcgacttcagctcacttgaaatgagtttgcctgaacttagcctatataa |
39453945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 39451673 - 39451753
Alignment:
| Q |
18 |
aaggacatgattgacttcagcaatggattcagtttatggcccgtgtttatgtttgcatgatgcctttgtataattttcatt |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39451673 |
aaggacatgattgacttcagcaatggattcagtttatggcccgtgtttatgtttgcatgatgcctttgtataaatttcatt |
39451753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 39461060 - 39461101
Alignment:
| Q |
18 |
aaggacatgattgacttcagcaatggattcagtttatggccc |
59 |
Q |
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| T |
39461060 |
aaggacatgattgacttcagcaatggattcagtttatggccc |
39461101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 17405438 - 17405351
Alignment:
| Q |
184 |
ataaggtccacgtggcagtctttcagtggccagagtgggattctttggcaactcgcttaagcgacttcagctcacttgaagcgagttt |
271 |
Q |
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| T |
17405438 |
ataaggtccatgtggcagtctttatgtggccaacgtgagattcttaggcaactttcttaagcgagtttagcacgcttgaagcgagttt |
17405351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 6639799 - 6639858
Alignment:
| Q |
233 |
aactcgctt-aagcgacttcagctcacttgaagcgagtttgcccgaactcagcccatataa |
292 |
Q |
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||||||||| ||||||||||||||| ||| ||||||||||||||||| | ||||||||||| |
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| T |
6639799 |
aactcgcttgaagcgacttcagctcgctt-aagcgagtttgcccgaatttagcccatataa |
6639858 |
T |
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