View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_22 (Length: 287)
Name: NF5897_low_22
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 42396229 - 42396366
Alignment:
| Q |
134 |
atcagtatggcctatctttattatcttgttccgataagtcatgatttaattaataccaccaagctcaaaaacattgatatactttcttcacaccttcttc |
233 |
Q |
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| T |
42396229 |
atcagtatggcttatctttattatcttgttccgataagtcatgatttaattaataccaccaagctcaaaaacattgatatactttcttcacaccttcttc |
42396328 |
T |
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| Q |
234 |
taagaaatgacgatcgaagaagaagaaacattaccaagcctt |
275 |
Q |
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| T |
42396329 |
taagaaatga----cgaagaagaagaaacactaccaagcctt |
42396366 |
T |
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Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42396156 - 42396228
Alignment:
| Q |
1 |
aatttaattagggtcctatgatatgtactctataaactgagtaacgatttactaataaaattgttgtttaatt |
73 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42396156 |
aatttaattagggtcctacgatatgtactctataaactgagtaacgatttactaataaaattgttgtttaatt |
42396228 |
T |
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