View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5897_low_25 (Length: 255)
Name: NF5897_low_25
Description: NF5897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5897_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 44881251 - 44881009
Alignment:
| Q |
1 |
tattttattcatagtagcttttccaaaatcnnnnnnnnnn-cttttcgaaaaacaaagaactaaagtgtaagagtttctaatcttnnnnnnnnnnnnnnn |
99 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881251 |
tattttattcatagtagcttttccaaaatctttttttttttcttttcgaaaaacaaagaactaaagtgtaagagtttctaatcttaaaaaaaaaaaaa-- |
44881154 |
T |
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| Q |
100 |
nttatcgtagtaaacaaatggaaattaacttcaactttcctcaaaatctctatnnnnnnnntaaaatcatatatatataatgcaccgtatatctttttaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||| |
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| T |
44881153 |
-ttatcgtagtaaacaaatggaaattaacttcaactttcctcaaaaactctataaaaaaaataaaatcatatgtatataatgcaccctatatctttttaa |
44881055 |
T |
|
| Q |
200 |
tggtattttaacgcatttctgaaactttcttagctcattgcctttg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881054 |
tggtattttaacgcatttctgaaactttcttagctcattgcctttg |
44881009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 44863559 - 44863510
Alignment:
| Q |
198 |
aatggtattttaacgcatttctgaaactttcttagctcattgcctttgct |
247 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
44863559 |
aatggtattttagtacatttctgaaactttcttagctcagcgcctttgct |
44863510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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